Effective results for Azorhizobium caulinodans ORS 571 (eggnog40)

Summary

Number of putative secreted proteins: 141
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 53 proteins (1 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
438753.AZC_2690+mitochondrial
438753.AZC_2570+ER
438753.AZC_2573+ER
438753.AZC_3312(PF01425)(mitochondrial); mitochondrial
438753.AZC_3889+(ER)
438753.AZC_4443+ER
438753.AZC_4524+(ER)
438753.AZC_3547+mitochondrial; (mitochondrial)
438753.AZC_2377+mitochondrial; ER
438753.AZC_1201+(mitochondrial)
438753.AZC_0155+ER
438753.AZC_1979+ER; mitochondrial
438753.AZC_0492+mitochondrial
438753.AZC_0017+(mitochondrial)
438753.AZC_0168(PF01968) (PF02538) (PF05378)
438753.AZC_0167(PF00839)mitochondrial
438753.AZC_0821+mitochondrial
438753.AZC_3138+ER
438753.AZC_2401(PF13787)ER
438753.AZC_4244+mitochondrial
438753.AZC_3468(PF05050)mitochondrial
438753.AZC_0564+ER
438753.AZC_0365+mitochondrial
438753.AZC_0779(PF00839)(mitochondrial)
438753.AZC_1519(PF05711)mitochondrial
438753.AZC_2297+(mitochondrial)
438753.AZC_4633(PF03901)(mitochondrial); (plastid)
438753.AZC_3265+(mitochondrial)
438753.AZC_0724+ER
438753.AZC_2827+ER
438753.AZC_3529(PF08881)(mitochondrial)
438753.AZC_2514+ER
438753.AZC_1564+(mitochondrial)
438753.AZC_0062+ER; (ER)
438753.AZC_3387+(mitochondrial)
438753.AZC_4126+(mitochondrial)
438753.AZC_1086+mitochondrial
438753.AZC_2699+(mitochondrial); plastid
438753.AZC_3379+(mitochondrial); plastid
438753.AZC_4195(PF13787)ER; (ER)
438753.AZC_3607PF14700 (PF00940)
438753.AZC_2355(PF01968) (PF05378)
438753.AZC_3793+(plastid)
438753.AZC_1797(PF01968) (PF05378)
438753.AZC_1300+(plastid)
438753.AZC_2634(PF01425)(plastid)
438753.AZC_2633(PF01425)plastid
438753.AZC_0556+(mitochondrial)
438753.AZC_1190(PF05050)(mitochondrial)
438753.AZC_0100+(mitochondrial)
438753.AZC_1247+(mitochondrial)
438753.AZC_2728(PF01968) (PF05378)
438753.AZC_0196+(ER)
438753.AZC_3039(PF01968) (PF05378)
438753.AZC_4419(PF05050)(mitochondrial)
438753.AZC_2923(PF01968) (PF05378)
438753.AZC_4187(PF01425)(plastid)
438753.AZC_2117(PF01968) (PF05378)
438753.AZC_1059(PF01425)
438753.AZC_2218(PF01442)
438753.AZC_2589+
438753.AZC_2564+
438753.AZC_0275+
438753.AZC_4037+
438753.AZC_4033+
438753.AZC_4087+
438753.AZC_1934+
438753.AZC_2591+
438753.AZC_2354(PF02538)
438753.AZC_2578(PF01425)
438753.AZC_3175+
438753.AZC_2828+
438753.AZC_0043(PF05050)
438753.AZC_2919(PF05050)
438753.AZC_2911+
438753.AZC_3306+
438753.AZC_3764+
438753.AZC_4527+
438753.AZC_0896+
438753.AZC_0208+
438753.AZC_2552+
438753.AZC_1796(PF02538)
438753.AZC_1550(PF01425)
438753.AZC_1559+
438753.AZC_3204(PF01425)
438753.AZC_2632(PF01425)
438753.AZC_3411+
438753.AZC_0923+
438753.AZC_4495+
438753.AZC_4497+
438753.AZC_2948(PF05686)
438753.AZC_3481+
438753.AZC_3480+
438753.AZC_1973(PF01425)
438753.AZC_1992+
438753.AZC_2082+
438753.AZC_2531+
438753.AZC_2624(PF01425)
438753.AZC_2623(PF01425)
438753.AZC_3040(PF02538)
438753.AZC_3467(PF05050)
438753.AZC_1197+
438753.AZC_1523(PF01425)
438753.AZC_1352+
438753.AZC_0977(PF02689)
438753.AZC_2429+
438753.AZC_2042(PF01425)
438753.AZC_1515(PF01425)
438753.AZC_1423+
438753.AZC_0110+
438753.AZC_4043+
438753.AZC_3071+
438753.AZC_3259+
438753.AZC_4141+
438753.AZC_1246+
438753.AZC_3811(PF05830)
438753.AZC_3004(PF05050)
438753.AZC_4152+
438753.AZC_2844(PF01425)
438753.AZC_0721(PF01425)
438753.AZC_4164+
438753.AZC_3826+
438753.AZC_1890(PF05711)
438753.AZC_2499(PF01425)
438753.AZC_2010+
438753.AZC_4430(PF01425)
438753.AZC_2658+
438753.AZC_3836+
438753.AZC_2139+
438753.AZC_1469+
438753.AZC_2815+
438753.AZC_0753+
438753.AZC_3589+
438753.AZC_3581+
438753.AZC_2922(PF02538)
438753.AZC_2693(PF01425)
438753.AZC_2020(PF01425)
438753.AZC_2116(PF02538)
438753.AZC_0666+
438753.AZC_0667+
438753.AZC_3281+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================