Metamenu

Effective results for Streptococcus sp. C150 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 17 proteins (1 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
435842.HMPREF0848_01674+ER
435842.HMPREF0848_00992+ER
435842.HMPREF0848_00649+ER
435842.HMPREF0848_00702+ER
435842.HMPREF0848_01357+ER
435842.HMPREF0848_00448+ER
435842.HMPREF0848_00060+(mitochondrial)
435842.HMPREF0848_00266+ER
435842.HMPREF0848_00486+(ER)
435842.HMPREF0848_01027(PF00344)ER
435842.HMPREF0848_01607+ER
435842.HMPREF0848_01298+ER
435842.HMPREF0848_00921+ER
435842.HMPREF0848_00935(PF03083)(ER)
435842.HMPREF0848_01341+ER
435842.HMPREF0848_01964(PF05257)ER
435842.HMPREF0848_00229+ER
435842.HMPREF0848_00353+ER
435842.HMPREF0848_01771(PF00344)mitochondrial
435842.HMPREF0848_01554+(mitochondrial)
435842.HMPREF0848_01950(PF13787)ER
435842.HMPREF0848_01953+ER
435842.HMPREF0848_01949(PF05257)ER
435842.HMPREF0848_00371+ER
435842.HMPREF0848_01062+mitochondrial
435842.HMPREF0848_01440(PF05257)ER
435842.HMPREF0848_00170(PF05257)ER
435842.HMPREF0848_01218(PF09683)ER
435842.HMPREF0848_01922+ER
435842.HMPREF0848_00089(PF05257)mitochondrial
435842.HMPREF0848_01683+mitochondrial; (mitochondrial)
435842.HMPREF0848_00325+(ER)
435842.HMPREF0848_01124+ER
435842.HMPREF0848_01698+mitochondrial
435842.HMPREF0848_00648(PF03714)(mitochondrial)
435842.HMPREF0848_01415+(mitochondrial)
435842.HMPREF0848_00080(PF05257)(mitochondrial)
435842.HMPREF0848_00316+(mitochondrial)
435842.HMPREF0848_01279+
435842.HMPREF0848_00984+
435842.HMPREF0848_01902+
435842.HMPREF0848_01406+
435842.HMPREF0848_00602PF02916
435842.HMPREF0848_00295+
435842.HMPREF0848_00076+
435842.HMPREF0848_00667+
435842.HMPREF0848_00065+
435842.HMPREF0848_01532+
435842.HMPREF0848_01305+
435842.HMPREF0848_01017+
435842.HMPREF0848_01637+
435842.HMPREF0848_00392+
435842.HMPREF0848_00394+
435842.HMPREF0848_00481+not used
435842.HMPREF0848_00004+
435842.HMPREF0848_00732(PF13787)
435842.HMPREF0848_00042+
435842.HMPREF0848_00251+
435842.HMPREF0848_00021+
435842.HMPREF0848_01752+
435842.HMPREF0848_01571+
435842.HMPREF0848_01376(PF03083)
435842.HMPREF0848_00934+
435842.HMPREF0848_01977+not used
435842.HMPREF0848_00347+
435842.HMPREF0848_00340(PF05495)
435842.HMPREF0848_00584+
435842.HMPREF0848_00836+
435842.HMPREF0848_01344+
435842.HMPREF0848_01967+not used
435842.HMPREF0848_00570+
435842.HMPREF0848_00178+
435842.HMPREF0848_01170+
435842.HMPREF0848_01776+
435842.HMPREF0848_01794+
435842.HMPREF0848_01884+
435842.HMPREF0848_00210+
435842.HMPREF0848_00360+
435842.HMPREF0848_01788+
435842.HMPREF0848_01789+
435842.HMPREF0848_01700+
435842.HMPREF0848_01540+
435842.HMPREF0848_00413+
435842.HMPREF0848_00633+
435842.HMPREF0848_01320+
435842.HMPREF0848_00700+
435842.HMPREF0848_00897+
435842.HMPREF0848_00400+
435842.HMPREF0848_01466+
435842.HMPREF0848_00326+
435842.HMPREF0848_00698+
435842.HMPREF0848_00057+
435842.HMPREF0848_01054(PF03714)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================