Metamenu

Effective results for Brucella abortus S19 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 65
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 9 proteins (0 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
430066.BAbS19_I09610+mitochondrial
430066.BAbS19_I08720+ER
430066.BAbS19_I13340+ER
430066.BAbS19_I08600+(mitochondrial); mitochondrial
430066.BAbS19_I15110+mitochondrial; (mitochondrial)
430066.BAbS19_I07770(PF06455)ER
430066.BAbS19_I08420+ER
430066.BAbS19_I11420+ER; (ER)
430066.BAbS19_II00690+ER
430066.BAbS19_I15450+ER
430066.BAbS19_I03130+mitochondrial
430066.BAbS19_II01410+(mitochondrial); (plastid)
430066.BAbS19_I02010+ER
430066.BAbS19_I14010+ER
430066.BAbS19_I05990(PF01755)(mitochondrial)
430066.BAbS19_I15930+ER
430066.BAbS19_II00630+(plastid)
430066.BAbS19_I04550+(mitochondrial)
430066.BAbS19_I06960(PF13207)(mitochondrial)
430066.BAbS19_I16890+(mitochondrial)
430066.BAbS19_I09680+(PF01442)
430066.BAbS19_I11480+
430066.BAbS19_I11440+
430066.BAbS19_II09740+
430066.BAbS19_I11920+
430066.BAbS19_I04100+
430066.BAbS19_I15130+
430066.BAbS19_I17670(PF09731)
430066.BAbS19_I12000+
430066.BAbS19_II07740+
430066.BAbS19_II00480+
430066.BAbS19_I11890+
430066.BAbS19_I03210(PF01755)
430066.BAbS19_II01510+
430066.BAbS19_II03890+
430066.BAbS19_I13330+
430066.BAbS19_I00160+
430066.BAbS19_I15140(PF01755)
430066.BAbS19_I08940+
430066.BAbS19_I19310+
430066.BAbS19_I13900+
430066.BAbS19_II06470+
430066.BAbS19_I10100+
430066.BAbS19_I05100+
430066.BAbS19_I14270+
430066.BAbS19_I07040+
430066.BAbS19_I12350+
430066.BAbS19_I13620+
430066.BAbS19_II01290+
430066.BAbS19_II02740(PF07930)
430066.BAbS19_I03220(PF00777)
430066.BAbS19_I14670+
430066.BAbS19_I11600+
430066.BAbS19_I09860+
430066.BAbS19_I18940+
430066.BAbS19_II09110+
430066.BAbS19_I09810+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================