Effective results for Actinobacillus pleuropneumoniae serovar 5b str. L20 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 29 proteins (0 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
416269.APL_1500(PF13518)(mitochondrial)
416269.APL_0916(PF13518)(mitochondrial)
416269.APL_0957(PF13718) (PF02130)
416269.APL_0137(PF10063)(ER)
416269.APL_1244(PF00872)
416269.APL_1869(PF00872)
416269.APL_0989(PF13518)not used
416269.APL_1441(PF00872)
416269.APL_1397(PF00872)
416269.APL_1664(PF13518)
416269.APL_1483(PF00872)
416269.APL_1725(PF00872)
416269.APL_1904(PF00872)
416269.APL_1227(PF00872)
416269.APL_1914(PF10571)
416269.APL_0770(PF00872)
416269.APL_0613(PF13518)
416269.APL_0984(PF13518)
416269.APL_0799(PF00872)
416269.APL_1056(PF13518)
416269.APL_1434(PF13518)
416269.APL_0050(PF00872)
416269.APL_1451(PF00872)
416269.APL_0210(PF13518)
416269.APL_1189(PF00165)
416269.APL_0589(PF05495)
416269.APL_1980(PF00872)
416269.APL_0694(PF02130)
416269.APL_0695(PF13718)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================