Effective results for Hoeflea phototrophica DFL-43 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
411684.HPDFL43_00470				(PF01794)	ER
411684.HPDFL43_01045				(PF04325)	(mitochondrial)
411684.HPDFL43_04281				(PF14248)	ER
411684.HPDFL43_20247				(PF04127)	mitochondrial
411684.HPDFL43_19487				(PF08666)	ER
411684.HPDFL43_14507				(PF01794)	ER
411684.HPDFL43_03901				(PF03209)	(ER)
411684.HPDFL43_20252				(PF04127)	(mitochondrial)
411684.HPDFL43_09257				(PF06455)	ER
411684.HPDFL43_04161				(PF01794)	ER
411684.HPDFL43_13440				(PF01794)	ER
411684.HPDFL43_06767				(PF01794)	ER
411684.HPDFL43_02864				(PF00028) (PF04862)
411684.HPDFL43_04081				(PF03209)	(mitochondrial)
411684.HPDFL43_05170				(PF13518)	(plastid)
411684.HPDFL43_07704				(PF13518)
411684.HPDFL43_11841				(PF08666)
411684.HPDFL43_11441				(PF13518)
411684.HPDFL43_09732				(PF01442)
411684.HPDFL43_07277				PF03188
411684.HPDFL43_21052				(PF08666)
411684.HPDFL43_02855				(PF00028)
411684.HPDFL43_02605				(PF05153)
411684.HPDFL43_14962				(PF13518)
411684.HPDFL43_09377				(PF10013)	not used
411684.HPDFL43_04131				(PF03209)
411684.HPDFL43_01570				(PF08666)
411684.HPDFL43_17725				(PF14248)
411684.HPDFL43_00815				(PF13518)
411684.HPDFL43_18062				PF00837
411684.HPDFL43_15522				(PF04325)	not used
411684.HPDFL43_15527				(PF04325)
411684.HPDFL43_20972				(PF08666)
411684.HPDFL43_14152				(PF08975)
411684.HPDFL43_12086				(PF08666)
411684.HPDFL43_18352				(PF09731)
411684.HPDFL43_16356				(PF13518)
411684.HPDFL43_07534				(PF04325)
411684.HPDFL43_17101				(PF08666)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================