Effective results for Parvimonas micra ATCC 33270 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 47 proteins (0 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
411465.PEPMIC_00652				(PF02517)	(ER)
411465.PEPMIC_00654				(PF02517)	(ER)
411465.PEPMIC_00386				(PF02517)	ER
411465.PEPMIC_00387				(PF02517)	ER
411465.PEPMIC_00002				(PF03602)	(mitochondrial)
411465.PEPMIC_00388				(PF02517)	ER
411465.PEPMIC_00389				(PF02517)	ER
411465.PEPMIC_00426				(PF05738)	ER
411465.PEPMIC_00165				(PF02517)	ER
411465.PEPMIC_00392				(PF02517)	(ER)
411465.PEPMIC_00390				(PF02517)	ER
411465.PEPMIC_01375				(PF05738)	ER
411465.PEPMIC_01040				(PF16199)	(mitochondrial)
411465.PEPMIC_00456				(PF02517)	(ER)
411465.PEPMIC_00457				(PF02517)	(ER)
411465.PEPMIC_00134				(PF05684)	ER
411465.PEPMIC_00685				(PF05738)	ER
411465.PEPMIC_00687				(PF02844) (PF02843)	(mitochondrial)
411465.PEPMIC_00910				(PF01496)	mitochondrial
411465.PEPMIC_00915				(PF16886)	(mitochondrial); mitochondrial
411465.PEPMIC_00917				(PF01813)	mitochondrial
411465.PEPMIC_00661				(PF02517)	ER
411465.PEPMIC_01424				(PF02517)	ER
411465.PEPMIC_00641				(PF05738)	ER
411465.PEPMIC_01487				(PF03602)	(mitochondrial)
411465.PEPMIC_01532				(PF02844) (PF02843)
411465.PEPMIC_00107				(PF02517)
411465.PEPMIC_00254				(PF01496)
411465.PEPMIC_00255				(PF01992)
411465.PEPMIC_00252				(PF01990)
411465.PEPMIC_00250				(PF16886)
411465.PEPMIC_01440				(PF16199)
411465.PEPMIC_00003				(PF03602)
411465.PEPMIC_00391				(PF02517)
411465.PEPMIC_00019				(PF02732)
411465.PEPMIC_01385				(PF05684)
411465.PEPMIC_01004				(PF04991)
411465.PEPMIC_01003				(PF04991)
411465.PEPMIC_00298				(PF04991)
411465.PEPMIC_00988				(PF03266)
411465.PEPMIC_00428				(PF05738)
411465.PEPMIC_01366				(PF04991)
411465.PEPMIC_00923				(PF16199)
411465.PEPMIC_00913				(PF01992)
411465.PEPMIC_00912				(PF01991)
411465.PEPMIC_00914				(PF01990)
411465.PEPMIC_00248				(PF01813)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================