Metamenu

Effective results for Lactobacillus helveticus DPC 4571 (eggnog40)

Summary

Number of putative secreted proteins: 100
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 100 proteins (26 high, 74 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
405566.lhv_0255(PF12323) (PF07282)(mitochondrial)
405566.lhv_0726(PF12323) (PF07282)ER
405566.lhv_0840(PF12323) (PF07282)(mitochondrial)
405566.lhv_1151(PF12323) (PF07282)(ER)
405566.lhv_0576PF01610(mitochondrial)
405566.lhv_1877(PF03577)(mitochondrial)
405566.lhv_0839(PF12323) (PF07282)(mitochondrial)
405566.lhv_1952(PF14478)ER
405566.lhv_1948(PF14478)ER
405566.lhv_0597(PF07282)mitochondrial
405566.lhv_0041(PF14478)ER
405566.lhv_1319(PF12323) (PF07282)
405566.lhv_0505(PF12323) (PF07282)
405566.lhv_1183(PF12323) (PF07282)
405566.lhv_0616(PF12323) (PF07282)
405566.lhv_0278(PF12323) (PF07282)
405566.lhv_0365(PF12323) (PF07282)
405566.lhv_0774(PF12323) (PF07282)
405566.lhv_2049(PF12323) (PF07282)
405566.lhv_1634PF01610
405566.lhv_0356(PF00872)
405566.lhv_1485PF01610
405566.lhv_1791PF01610
405566.lhv_1795(PF05704)
405566.lhv_1640PF01610
405566.lhv_1860(PF00872)
405566.lhv_0212(PF03051)
405566.lhv_0211(PF07282)
405566.lhv_0030PF01610
405566.lhv_1256(PF02787)
405566.lhv_1121(PF07282)
405566.lhv_1787(PF00872)
405566.lhv_1874(PF07282)
405566.lhv_0515(PF07282)
405566.lhv_1443(PF02787)
405566.lhv_0020PF01610
405566.lhv_1683(PF07282)
405566.lhv_0832(PF00872)
405566.lhv_0010PF01610
405566.lhv_1858(PF00872)
405566.lhv_1694(PF00872)
405566.lhv_1691(PF00872)
405566.lhv_0798(PF00872)
405566.lhv_0792(PF07282)
405566.lhv_0221(PF03051)
405566.lhv_0250(PF03577)
405566.lhv_0077(PF01501)
405566.lhv_0076(PF01501)
405566.lhv_0075(PF01501)
405566.lhv_1524PF01610
405566.lhv_1525(PF02843)
405566.lhv_0091(PF00872)
405566.lhv_0668(PF00872)
405566.lhv_1088PF01610
405566.lhv_1427(PF07282)
405566.lhv_0870PF01610
405566.lhv_0274(PF00872)
405566.lhv_1096(PF06838)
405566.lhv_1094(PF06838)
405566.lhv_1099(PF00872)
405566.lhv_1430PF01610
405566.lhv_1947PF01610
405566.lhv_1941PF01610
405566.lhv_2013(PF00872)
405566.lhv_0268PF01610
405566.lhv_1377(PF03577)
405566.lhv_0452PF01610
405566.lhv_0925PF01610
405566.lhv_0630PF01610
405566.lhv_1242(PF00872)
405566.lhv_1361PF01610
405566.lhv_1960PF01610
405566.lhv_2035(PF00872)
405566.lhv_2921(PF07282)
405566.lhv_2924(PF07282)
405566.lhv_0849(PF00872)
405566.lhv_0939(PF07282)
405566.lhv_0933(PF00872)
405566.lhv_0151PF01610
405566.lhv_0263(PF00872)
405566.lhv_1179(PF07282)
405566.lhv_1919PF01610
405566.lhv_1825(PF07282)
405566.lhv_0542(PF07282)
405566.lhv_0384PF01610
405566.lhv_0363(PF03051)
405566.lhv_1901(PF00872)
405566.lhv_1908(PF00872)
405566.lhv_2902(PF02787)
405566.lhv_0952(PF00872)
405566.lhv_0178(PF07282)
405566.lhv_1625(PF02843)
405566.lhv_1755(PF07282)
405566.lhv_1751(PF03577)
405566.lhv_1245(PF00872)
405566.lhv_0963(PF00872)
405566.lhv_0414PF01610
405566.lhv_0983(PF03051)
405566.lhv_0982PF01610
405566.lhv_0346PF01610

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================