Effective results for Streptococcus equi subsp. zooepidemicus (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 36 proteins (11 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
40041.SZO_03720			+	PF01391	mitochondrial
40041.SZO_14890			+	PF01391	(ER); (mitochondrial)
40041.SZO_12550				(PF13518)	(mitochondrial)
40041.SZO_13310			+		ER
40041.SZO_00020			+		mitochondrial; (mitochondrial)
40041.SZO_04910				PF01391	ER; (ER)
40041.SZO_11860			+		ER
40041.SZO_03040			+		ER
40041.SZO_02950			+		ER
40041.SZO_09941				(PF09683)	ER
40041.SZO_13850				PF01391	ER; (ER)
40041.SZO_05380				PF01391	ER; (ER)
40041.SZO_04720			+		ER
40041.SZO_01820			+		ER
40041.SZO_15530			+		ER
40041.SZO_13900			+		(mitochondrial)
40041.SZO_05350			+		(mitochondrial)
40041.SZO_05370				(PF13518)	(mitochondrial)
40041.SZO_03530			+		ER
40041.SZO_19400			+		ER
40041.SZO_16490				(PF13518)	(mitochondrial)
40041.SZO_12830			+		ER
40041.SZO_09470			+		ER
40041.SZO_15100			+		ER
40041.SZO_07010			+		(mitochondrial); (ER)
40041.SZO_01630			+	PF01391	(mitochondrial)
40041.SZO_13290			+		(mitochondrial)
40041.SZO_11050			+	(PF13551)
40041.SZO_00830				PF01391	(mitochondrial)
40041.SZO_17320			+	(PF14021)
40041.SZO_02580			+	(PF13551)
40041.SZO_18110			+	PF01391
40041.SZO_11410				(PF03714)	(mitochondrial)
40041.SZO_02320			+	(PF13551)
40041.SZO_16920			+	(PF13551)
40041.SZO_12230			+	PF01391
40041.SZO_10150			+	(PF06280)
40041.SZO_00920			+	(PF13551)
40041.SZO_05150			+		(mitochondrial)
40041.SZO_11000			+		(mitochondrial)
40041.SZO_08570				(PF13518)
40041.SZO_03100			+
40041.SZO_16370			+
40041.SZO_09430			+
40041.SZO_15410			+
40041.SZO_11070			+
40041.SZO_19120			+
40041.SZO_17550			+
40041.SZO_12790			+
40041.SZO_10330				(PF01764)
40041.SZO_14810				(PF06280)
40041.SZO_01150			+
40041.SZO_17540				PF01391
40041.SZO_10470			+
40041.SZO_03140			+
40041.SZO_00440			+
40041.SZO_13910			+
40041.SZO_03390				(PF01764)
40041.SZO_00840				PF01391
40041.SZO_03980			+
40041.SZO_09800			+
40041.SZO_10840			+
40041.SZO_15640			+
40041.SZO_00510			+
40041.SZO_01930			+
40041.SZO_10940			+
40041.SZO_16270			+
40041.SZO_09910			+
40041.SZO_01300				(PF13518)
40041.SZO_17640			+
40041.SZO_10600			+
40041.SZO_18460			+
40041.SZO_14120			+
40041.SZO_19370			+
40041.SZO_14130			+
40041.SZO_18700			+
40041.SZO_05410			+
40041.SZO_11750				(PF03714)
40041.SZO_17280				(PF14021)
40041.SZO_12990			+
40041.SZO_09650				(PF14311)
40041.SZO_01240				(PF01764)
40041.SZO_08250			+
40041.SZO_01530			+
40041.SZO_00750			+
40041.SZO_09640			+
40041.SZO_03940			+
40041.SZO_06510			+
40041.SZO_13510			+
40041.SZO_01640				(PF05495)
40041.SZO_06330			+
40041.SZO_14450				(PF14021)
40041.SZO_06690				(PF13518)
40041.SZO_07740				(PF13518)
40041.SZO_10690			+
40041.SZO_02210			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================