Effective results for Enterobacter sp. 638 (eggnog40)

Summary

Number of putative secreted proteins: 559
- Predicted by EffectiveT3: 160 (high confidence), 243 (low confidence)
- Predicted by EffectiveCCBD: 27 within, 16 before, 36 behind expected region 25..70aa
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
399742.Ent638_0017		(>)		(PF00367)	ER
399742.Ent638_1537	+		+		(mitochondrial); plastid
399742.Ent638_3015				(PF00367)	ER
399742.Ent638_3014				(PF07678)	ER
399742.Ent638_3396		(>)			ER
399742.Ent638_0737	+				mitochondrial
399742.Ent638_2399		(>)			ER
399742.Ent638_3289		(>)			ER
399742.Ent638_0416			+		ER
399742.Ent638_0890			+		(mitochondrial)
399742.Ent638_0899			+		ER
399742.Ent638_1616				(PF00367)	mitochondrial; (mitochondrial)
399742.Ent638_2928				(PF05231)	ER; (ER)
399742.Ent638_1910		+			ER
399742.Ent638_2248				(PF00959)	ER
399742.Ent638_0925	+				(mitochondrial); (plastid)
399742.Ent638_3407			+		ER
399742.Ent638_0272		(>)			mitochondrial
399742.Ent638_0984				(PF00367)	(mitochondrial)
399742.Ent638_2105		+			ER
399742.Ent638_3560			+		ER
399742.Ent638_1238			+		ER
399742.Ent638_1892		+			ER
399742.Ent638_2229	+				(mitochondrial)
399742.Ent638_2681				(PF05231)	(mitochondrial)
399742.Ent638_3551			+		ER
399742.Ent638_0514		+			ER
399742.Ent638_1036			+		(mitochondrial)
399742.Ent638_0341		+			(mitochondrial)
399742.Ent638_0028				(PF05231)	ER
399742.Ent638_0151			+		ER
399742.Ent638_2978			+		ER
399742.Ent638_2376		+			ER
399742.Ent638_1689		+			(mitochondrial)
399742.Ent638_1596	+				(mitochondrial); (plastid)
399742.Ent638_0835				(PF05231)	ER
399742.Ent638_0305	+				mitochondrial; (mitochondrial)
399742.Ent638_2176	+				(ER)
399742.Ent638_3177		(>)			ER
399742.Ent638_3956			+		ER
399742.Ent638_2416			+		(mitochondrial)
399742.Ent638_2090	+				(mitochondrial)
399742.Ent638_2771			+		(ER); ER
399742.Ent638_0177	+				(ER)
399742.Ent638_1976	+				mitochondrial; (mitochondrial)
399742.Ent638_2950		+			ER
399742.Ent638_0921		(>)			ER
399742.Ent638_2400			+		ER
399742.Ent638_2085			+		ER
399742.Ent638_3267			+		ER
399742.Ent638_0102	+				(mitochondrial)
399742.Ent638_0100			+		mitochondrial
399742.Ent638_0011	+				mitochondrial
399742.Ent638_1210		(>)			ER
399742.Ent638_3876			+		ER
399742.Ent638_1433		+			(ER)
399742.Ent638_0602		(<)			ER
399742.Ent638_1734		+			ER
399742.Ent638_2992				(PF05231)	ER
399742.Ent638_2609				(PF00959)	ER
399742.Ent638_1583		(>)			mitochondrial
399742.Ent638_1341				(PF13455)	ER
399742.Ent638_2148			+		ER
399742.Ent638_1495		+			ER
399742.Ent638_2456			+		ER
399742.Ent638_1848			+		ER
399742.Ent638_3562		(<)			(ER); (plastid)
399742.Ent638_3854		(>)			ER
399742.Ent638_3494				(PF00959)	ER
399742.Ent638_0287		(>)			ER
399742.Ent638_0358			+		ER
399742.Ent638_1538			+		ER
399742.Ent638_1880	+				ER
399742.Ent638_0132	+				(ER)
399742.Ent638_1063	(+)	+			(plastid)
399742.Ent638_0795				(PF00959)	(mitochondrial)
399742.Ent638_2865	+				(mitochondrial)
399742.Ent638_1072	+				plastid
399742.Ent638_1291	+				(mitochondrial)
399742.Ent638_3728			+		(mitochondrial)
399742.Ent638_0085	(+)				ER
399742.Ent638_0084	(+)				ER
399742.Ent638_2935	+				plastid
399742.Ent638_0928	(+)				mitochondrial; (mitochondrial)
399742.Ent638_0501	(+)				ER; (ER)
399742.Ent638_1838	(+)				(mitochondrial); plastid
399742.Ent638_1830	+	(<)
399742.Ent638_1480	(+)				(mitochondrial)
399742.Ent638_1483	(+)				ER
399742.Ent638_1936	(+)				(mitochondrial)
399742.Ent638_4020	(+)				ER
399742.Ent638_0142	+				plastid
399742.Ent638_3231				(PF00367)	(plastid)
399742.Ent638_3782	+	(>)
399742.Ent638_3847			+		(mitochondrial)
399742.Ent638_1559	(+)				ER; (ER)
399742.Ent638_3158	+	(>)
399742.Ent638_2151	+	(>)
399742.Ent638_3935	+				(ER)
399742.Ent638_3848			+		mitochondrial
399742.Ent638_3449	(+)				(mitochondrial)
399742.Ent638_0947			+		(mitochondrial)
399742.Ent638_0160		(<)			(ER)
399742.Ent638_1789	+				(mitochondrial)
399742.Ent638_2417	+		+
399742.Ent638_2529	+				(plastid)
399742.Ent638_2522	+				plastid
399742.Ent638_0316	+				(ER)
399742.Ent638_0171	+	+
399742.Ent638_0552		(>)			(mitochondrial)
399742.Ent638_2538	(+)				(ER)
399742.Ent638_3463	+				(ER)
399742.Ent638_1394	+		+
399742.Ent638_3660	(+)				(mitochondrial)
399742.Ent638_1827				(PF00367)	(plastid)
399742.Ent638_1360	+				(plastid)
399742.Ent638_0806		(>)			(plastid)
399742.Ent638_3276	+				(ER)
399742.Ent638_3804	(+)				ER
399742.Ent638_4131		(<)	+
399742.Ent638_1509	+				(plastid)
399742.Ent638_1721	+				(plastid)
399742.Ent638_2455	+				(plastid)
399742.Ent638_0912	(+)				(mitochondrial)
399742.Ent638_2447		(>)
399742.Ent638_2441	(+)		+
399742.Ent638_2063		(<)
399742.Ent638_3007			+
399742.Ent638_3000	(+)				(mitochondrial)
399742.Ent638_3008			+
399742.Ent638_3397		(<)
399742.Ent638_3220	+
399742.Ent638_2660		(>)
399742.Ent638_0056		(>)
399742.Ent638_2714	+
399742.Ent638_0506	(+)				plastid
399742.Ent638_4151	(+)				(plastid)
399742.Ent638_0439				(PF00367)
399742.Ent638_1515	+
399742.Ent638_1525	(+)		+
399742.Ent638_1521	+
399742.Ent638_1098	(+)				plastid
399742.Ent638_1389	+
399742.Ent638_1676	+
399742.Ent638_1251	+
399742.Ent638_2870	+
399742.Ent638_2474	+
399742.Ent638_0607	+
399742.Ent638_2123	+
399742.Ent638_2121	(+)				(mitochondrial)
399742.Ent638_3634	+
399742.Ent638_4090	(+)				(mitochondrial)
399742.Ent638_3527	+
399742.Ent638_3529		(>)
399742.Ent638_0933	(+)			(PF00367)
399742.Ent638_1260	+
399742.Ent638_1266			+
399742.Ent638_2864	+
399742.Ent638_2263	+
399742.Ent638_2464	(+)				(plastid)
399742.Ent638_2005	+
399742.Ent638_3027		(>)
399742.Ent638_2391	+
399742.Ent638_2649		(<)
399742.Ent638_2732	+
399742.Ent638_1359	+
399742.Ent638_2947	+
399742.Ent638_0073	+
399742.Ent638_0705	+
399742.Ent638_0897	+
399742.Ent638_1470	+
399742.Ent638_1273		+
399742.Ent638_1203	+
399742.Ent638_3296	(+)		+
399742.Ent638_2749	+
399742.Ent638_2740				(PF00367)
399742.Ent638_1226	+
399742.Ent638_3502		+
399742.Ent638_3500			+
399742.Ent638_3963	+
399742.Ent638_1222	(+)				(plastid)
399742.Ent638_0246		+
399742.Ent638_1049				PF16190
399742.Ent638_1040	(+)				(plastid)
399742.Ent638_0400	(+)				(mitochondrial)
399742.Ent638_2807	+
399742.Ent638_1916	+
399742.Ent638_1138	+
399742.Ent638_1622			+
399742.Ent638_2023		+
399742.Ent638_2021				(PF00367)
399742.Ent638_0438	+
399742.Ent638_0387	+
399742.Ent638_3198	+
399742.Ent638_0922	+
399742.Ent638_3374		+
399742.Ent638_2409	+
399742.Ent638_3575	+
399742.Ent638_3570			+
399742.Ent638_0878		(>)
399742.Ent638_0057	+
399742.Ent638_1589	+
399742.Ent638_0477	+
399742.Ent638_0475	+
399742.Ent638_0186	+
399742.Ent638_1055		(>)
399742.Ent638_1059	+
399742.Ent638_0695		+
399742.Ent638_2838			+
399742.Ent638_1908		(<)
399742.Ent638_1906	+
399742.Ent638_2235		+
399742.Ent638_2585	+
399742.Ent638_3989			+
399742.Ent638_3188				(PF00367)
399742.Ent638_3964				(PF00367)
399742.Ent638_2765	+
399742.Ent638_2563			+
399742.Ent638_1772		+
399742.Ent638_3563	+
399742.Ent638_1950	+
399742.Ent638_3417		(>)
399742.Ent638_4032	+
399742.Ent638_1258	+
399742.Ent638_3344	+
399742.Ent638_1333	(+)				(plastid)
399742.Ent638_1025	(+)	(>)
399742.Ent638_3249	+
399742.Ent638_0998			+
399742.Ent638_0266			+
399742.Ent638_3318	+
399742.Ent638_3087	(+)	+
399742.Ent638_3792	+
399742.Ent638_3420			+
399742.Ent638_4021		(>)
399742.Ent638_0039	+
399742.Ent638_0527	+
399742.Ent638_0032	+
399742.Ent638_2995	+
399742.Ent638_1321			+
399742.Ent638_1031			+
399742.Ent638_1039	+
399742.Ent638_1038		(>)
399742.Ent638_2219	+
399742.Ent638_2364			+
399742.Ent638_1349	+
399742.Ent638_1350	+
399742.Ent638_2784	(+)				(ER)
399742.Ent638_3431	(+)				(mitochondrial)
399742.Ent638_3435	+
399742.Ent638_4012		+
399742.Ent638_0843		+
399742.Ent638_1006	+
399742.Ent638_1958	+
399742.Ent638_0814			+
399742.Ent638_2377		+
399742.Ent638_2797			+
399742.Ent638_3444	(+)				(mitochondrial)
399742.Ent638_1592	+
399742.Ent638_0540	+
399742.Ent638_2898			+
399742.Ent638_2891		(<)
399742.Ent638_1307	+
399742.Ent638_3141			+
399742.Ent638_3144	(+)				(mitochondrial)
399742.Ent638_3920	+
399742.Ent638_2094	+
399742.Ent638_2098			+
399742.Ent638_2524		+
399742.Ent638_0481	+
399742.Ent638_2634			+
399742.Ent638_2779			+
399742.Ent638_4074		(<)
399742.Ent638_0791	+
399742.Ent638_0318	+
399742.Ent638_0958	+
399742.Ent638_0956			+
399742.Ent638_0230	+
399742.Ent638_0173	(+)				(ER)
399742.Ent638_0554	+
399742.Ent638_0550	+
399742.Ent638_4007		(>)
399742.Ent638_1751	+
399742.Ent638_1201	+
399742.Ent638_1977	+
399742.Ent638_1194				(PF00367)
399742.Ent638_3137		(>)
399742.Ent638_3132	+
399742.Ent638_2080	+
399742.Ent638_3046				(PF00367)
399742.Ent638_3683			+
399742.Ent638_3911	(+)				(plastid)
399742.Ent638_2622	+
399742.Ent638_3468	+
399742.Ent638_3667	+
399742.Ent638_0949	+
399742.Ent638_3128		(<)
399742.Ent638_4069	+
399742.Ent638_0768		(>)
399742.Ent638_0769		(>)
399742.Ent638_1343	+
399742.Ent638_0365	+
399742.Ent638_0966	+
399742.Ent638_0106		(>)
399742.Ent638_0586	+
399742.Ent638_0544		+
399742.Ent638_1015			+
399742.Ent638_1974	(+)				(ER)
399742.Ent638_2320	(+)				(plastid)
399742.Ent638_1550	(+)		+
399742.Ent638_2113	(+)				(mitochondrial)
399742.Ent638_2434	+
399742.Ent638_2187	+
399742.Ent638_2182		(>)
399742.Ent638_3056		(>)
399742.Ent638_3583	+
399742.Ent638_3588	+
399742.Ent638_1548	+
399742.Ent638_0775			+
399742.Ent638_1878	+
399742.Ent638_0977	(+)	(<)
399742.Ent638_2941	+
399742.Ent638_3700	+
399742.Ent638_1117	+
399742.Ent638_1299	(+)				(mitochondrial)
399742.Ent638_3065	+
399742.Ent638_1587			+
399742.Ent638_0036	+
399742.Ent638_3489			+
399742.Ent638_3482	+
399742.Ent638_3762	(+)				(mitochondrial)
399742.Ent638_4101	+
399742.Ent638_0391		(>)
399742.Ent638_0749	+
399742.Ent638_1508	+
399742.Ent638_1657	+				not used
399742.Ent638_2314		(<)
399742.Ent638_2298			+
399742.Ent638_3106	+
399742.Ent638_3103	+
399742.Ent638_2643			+
399742.Ent638_1742	+
399742.Ent638_0152			+
399742.Ent638_0154			+
399742.Ent638_3652		(>)
399742.Ent638_3651	+
399742.Ent638_3650			+
399742.Ent638_2887			+
399742.Ent638_1591	+
399742.Ent638_1353	+
399742.Ent638_1144	+
399742.Ent638_0281		(<)
399742.Ent638_2214	+
399742.Ent638_0357	+
399742.Ent638_1712	+
399742.Ent638_0914	+
399742.Ent638_1982	+
399742.Ent638_0389	+
399742.Ent638_3606		(<)
399742.Ent638_1400	+
399742.Ent638_0744	+
399742.Ent638_2286	(+)
399742.Ent638_4126	(+)
399742.Ent638_3004	(+)
399742.Ent638_3394	(+)
399742.Ent638_0430	(+)
399742.Ent638_1523	(+)
399742.Ent638_1673	(+)
399742.Ent638_2478	(+)
399742.Ent638_3388	(+)
399742.Ent638_0691	(+)
399742.Ent638_3636	(+)
399742.Ent638_1605	(+)
399742.Ent638_1261	(+)
399742.Ent638_1262	(+)
399742.Ent638_1263	(+)
399742.Ent638_1112	(+)
399742.Ent638_3541	(+)
399742.Ent638_2004	(+)
399742.Ent638_3020	(+)
399742.Ent638_2735	(+)
399742.Ent638_4083	(+)
399742.Ent638_4086	(+)
399742.Ent638_0414	(+)
399742.Ent638_0096	(+)
399742.Ent638_0896	(+)
399742.Ent638_1617	(+)
399742.Ent638_2810	(+)
399742.Ent638_1292	(+)
399742.Ent638_2257	(+)
399742.Ent638_2251	(+)
399742.Ent638_1106	(+)
399742.Ent638_3745	(+)
399742.Ent638_2929	(+)
399742.Ent638_2032	(+)
399742.Ent638_1855	(+)
399742.Ent638_3726	(+)
399742.Ent638_1754	(+)
399742.Ent638_3613	(+)
399742.Ent638_3505	(+)
399742.Ent638_0060	(+)
399742.Ent638_0202	(+)
399742.Ent638_1008	(+)
399742.Ent638_4019	(+)
399742.Ent638_2022	(+)
399742.Ent638_2110	(+)
399742.Ent638_0770	(+)
399742.Ent638_0773	(+)
399742.Ent638_3577	(+)
399742.Ent638_3571	(+)
399742.Ent638_3405	(+)
399742.Ent638_0276	(+)
399742.Ent638_3640	(+)
399742.Ent638_0508	(+)
399742.Ent638_0182	(+)
399742.Ent638_0183	(+)
399742.Ent638_1450	(+)
399742.Ent638_2904	(+)
399742.Ent638_1002	(+)
399742.Ent638_2581	(+)
399742.Ent638_2699	(+)
399742.Ent638_2561	(+)
399742.Ent638_2565	(+)
399742.Ent638_3561	(+)
399742.Ent638_1249	(+)
399742.Ent638_3415	(+)
399742.Ent638_4033	(+)
399742.Ent638_0862	(+)
399742.Ent638_0513	(+)
399742.Ent638_0465	(+)
399742.Ent638_0461	(+)
399742.Ent638_0741	(+)
399742.Ent638_1020	(+)
399742.Ent638_0684	(+)
399742.Ent638_1938	(+)
399742.Ent638_1934	(+)
399742.Ent638_2916	(+)
399742.Ent638_0269	(+)
399742.Ent638_0344	(+)
399742.Ent638_1965	(+)
399742.Ent638_3951	(+)
399742.Ent638_2685	(+)
399742.Ent638_3889	(+)
399742.Ent638_2572	(+)
399742.Ent638_3221	(+)
399742.Ent638_3554	(+)
399742.Ent638_3227	(+)
399742.Ent638_3559	(+)
399742.Ent638_0041	(+)
399742.Ent638_0218	(+)
399742.Ent638_0455	(+)
399742.Ent638_1492	(+)
399742.Ent638_1037	(+)
399742.Ent638_1921	(+)
399742.Ent638_1140	(+)
399742.Ent638_2216	(+)
399742.Ent638_1729	(+)
399742.Ent638_1812	(+)
399742.Ent638_1345	(+)
399742.Ent638_3166	(+)
399742.Ent638_0127	(+)
399742.Ent638_0026	(+)
399742.Ent638_2147	(+)
399742.Ent638_1311	(+)
399742.Ent638_1003	(+)
399742.Ent638_2371	(+)
399742.Ent638_3154	(+)
399742.Ent638_3937	(+)
399742.Ent638_3843	(+)
399742.Ent638_3204	(+)
399742.Ent638_3207	(+)
399742.Ent638_3203	(+)
399742.Ent638_2592	(+)
399742.Ent638_1045	(+)
399742.Ent638_0788	+
399742.Ent638_1786	(+)
399742.Ent638_1761	(+)
399742.Ent638_3778	(+)
399742.Ent638_1184	(+)
399742.Ent638_2414	(+)
399742.Ent638_3322	(+)
399742.Ent638_3328	(+)
399742.Ent638_1745	(+)
399742.Ent638_2528	(+)
399742.Ent638_2526	(+)
399742.Ent638_3211	(+)
399742.Ent638_2639	(+)
399742.Ent638_3456	(+)
399742.Ent638_0798	(+)
399742.Ent638_1373	(+)
399742.Ent638_1370	(+)
399742.Ent638_1683	(+)
399742.Ent638_2952	(+)
399742.Ent638_1191	(+)
399742.Ent638_0260	(+)
399742.Ent638_2403	(+)
399742.Ent638_0831	(+)
399742.Ent638_2404	(+)
399742.Ent638_3912	(+)
399742.Ent638_3915	(+)
399742.Ent638_3916	(+)
399742.Ent638_2531	(+)
399742.Ent638_2624	(+)
399742.Ent638_3465	+
399742.Ent638_4066	(+)
399742.Ent638_0819	(+)
399742.Ent638_0763	(+)
399742.Ent638_0105	(+)
399742.Ent638_1969	(+)
399742.Ent638_2323	(+)
399742.Ent638_2324	(+)
399742.Ent638_2326	(+)
399742.Ent638_1181	(+)
399742.Ent638_3125	(+)
399742.Ent638_1763	(+)
399742.Ent638_2615	(+)				not used
399742.Ent638_2612	(+)
399742.Ent638_3676	(+)
399742.Ent638_1879	(+)
399742.Ent638_0377	(+)
399742.Ent638_0979	(+)
399742.Ent638_0592	(+)
399742.Ent638_0599	(+)
399742.Ent638_1229	(+)
399742.Ent638_1428	(+)
399742.Ent638_2331	(+)
399742.Ent638_0350	(+)
399742.Ent638_1736	(+)
399742.Ent638_2041	(+)
399742.Ent638_2045	(+)
399742.Ent638_3242	(+)
399742.Ent638_1017	(+)
399742.Ent638_2602	(+)
399742.Ent638_3480	(+)
399742.Ent638_0454	(+)
399742.Ent638_0457	(+)
399742.Ent638_0349	(+)
399742.Ent638_4130	(+)
399742.Ent638_0903	(+)
399742.Ent638_1134	(+)
399742.Ent638_0639	(+)
399742.Ent638_0126	(+)
399742.Ent638_1650	(+)
399742.Ent638_1323	(+)
399742.Ent638_2299	(+)
399742.Ent638_3076	(+)
399742.Ent638_1597	(+)
399742.Ent638_1556	(+)
399742.Ent638_3257	(+)
399742.Ent638_2707	(+)
399742.Ent638_4143	(+)
399742.Ent638_4141	(+)
399742.Ent638_1531	(+)
399742.Ent638_3222	(+)
399742.Ent638_1491	(+)
399742.Ent638_0629	(+)
399742.Ent638_3605	(+)
399742.Ent638_1401	(+)
399742.Ent638_1390	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.3 (3/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================