Metamenu

Effective results for Bifidobacterium bifidum NCIMB 41171 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398513.BBNG_01141(PF06541)ER
398513.BBNG_01796(PF16403)(mitochondrial); (plastid)
398513.BBNG_01069(PF06541)ER
398513.BBNG_00100(PF16403)mitochondrial
398513.BBNG_00718(PF04326)
398513.BBNG_01583(PF07555)
398513.BBNG_01036(PF06541)
398513.BBNG_00776(PF09511)
398513.BBNG_01827(PF04326)
398513.BBNG_01809(PF04326)
398513.BBNG_01467(PF08354)
398513.BBNG_01073(PF04326)
398513.BBNG_01470(PF07555)
398513.BBNG_00799(PF16565)
398513.BBNG_00797(PF04326)
398513.BBNG_00189(PF16403)
398513.BBNG_00290(PF16403)
398513.BBNG_00050(PF04326)
398513.BBNG_01393(PF06541)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================