Metamenu

Effective results for Staphylococcus carnosus subsp. carnosus TM300 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 24 proteins (0 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
396513.Sca_0404(PF05257)ER
396513.Sca_1873(PF11070)ER
396513.Sca_0311(PF05257)(ER)
396513.Sca_1364(PF13603)ER
396513.Sca_2430(PF05257)ER
396513.Sca_0809(PF05257)ER
396513.Sca_1468(PF00477)
396513.Sca_0385(PF05495)
396513.Sca_1715(PF00344)
396513.Sca_0095(PF05257)
396513.Sca_0278(PF13420)
396513.Sca_0518(PF05257)
396513.Sca_0447(PF13420)
396513.Sca_2022(PF02677)
396513.Sca_2021(PF02677)
396513.Sca_1634(PF03630)
396513.Sca_2201(PF00344)
396513.Sca_0301(PF13420)
396513.Sca_1790(PF05257)
396513.Sca_1365(PF13603)
396513.Sca_0372(PF06941)
396513.Sca_0373(PF06941)
396513.Sca_1741(PF13420)
396513.Sca_1063(PF13420)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================