Effective results for Maricaulis maris MCS10 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 29 proteins (1 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
394221.Mmar10_1819				(PF05684)	(ER)
394221.Mmar10_2764				(PF05704)	(mitochondrial)
394221.Mmar10_0445				(PF00050)	ER
394221.Mmar10_2352				(PF01541)	mitochondrial
394221.Mmar10_0883				(PF01541)	(mitochondrial)
394221.Mmar10_0472				(PF05684)	ER; (ER)
394221.Mmar10_0877				(PF01541)	ER
394221.Mmar10_1504				(PF00028)	mitochondrial
394221.Mmar10_0913				(PF14295)	ER
394221.Mmar10_1124				(PF00045)	(mitochondrial)
394221.Mmar10_2481				(PF13469)	(mitochondrial)
394221.Mmar10_0365				(PF04768)
394221.Mmar10_2554				(PF13661)
394221.Mmar10_1975				(PF01541)
394221.Mmar10_0827				(PF01541)
394221.Mmar10_2564				(PF01786)
394221.Mmar10_0999				(PF10013)	not used
394221.Mmar10_2649				(PF13469)
394221.Mmar10_1812				(PF13469)
394221.Mmar10_1813				(PF13661)
394221.Mmar10_1051				(PF13469)
394221.Mmar10_2900				(PF13469)
394221.Mmar10_2493				(PF00028)
394221.Mmar10_2057				(PF01541)
394221.Mmar10_1816				(PF01541)
394221.Mmar10_0772				(PF01541)
394221.Mmar10_1180				(PF13469)
394221.Mmar10_1181				(PF13469)
394221.Mmar10_3075				PF10520

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================