Effective results for Maricaulis maris MCS10 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 29 proteins (1 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
394221.Mmar10_1819(PF05684)(ER)
394221.Mmar10_2764(PF05704)(mitochondrial)
394221.Mmar10_0445(PF00050)ER
394221.Mmar10_2352(PF01541)mitochondrial
394221.Mmar10_0883(PF01541)(mitochondrial)
394221.Mmar10_0472(PF05684)ER; (ER)
394221.Mmar10_0877(PF01541)ER
394221.Mmar10_1504(PF00028)mitochondrial
394221.Mmar10_0913(PF14295)ER
394221.Mmar10_1124(PF00045)(mitochondrial)
394221.Mmar10_2481(PF13469)(mitochondrial)
394221.Mmar10_0365(PF04768)
394221.Mmar10_2554(PF13661)
394221.Mmar10_1975(PF01541)
394221.Mmar10_0827(PF01541)
394221.Mmar10_2564(PF01786)
394221.Mmar10_0999(PF10013)not used
394221.Mmar10_2649(PF13469)
394221.Mmar10_1812(PF13469)
394221.Mmar10_1813(PF13661)
394221.Mmar10_1051(PF13469)
394221.Mmar10_2900(PF13469)
394221.Mmar10_2493(PF00028)
394221.Mmar10_2057(PF01541)
394221.Mmar10_1816(PF01541)
394221.Mmar10_0772(PF01541)
394221.Mmar10_1180(PF13469)
394221.Mmar10_1181(PF13469)
394221.Mmar10_3075PF10520

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================