Metamenu

Effective results for gamma proteobacterium HTCC5015 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 15 proteins (0 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391615.GP5015_237(PF14539)mitochondrial; (mitochondrial)
391615.GP5015_1051(PF09317)ER
391615.GP5015_2490(PF09317)ER
391615.GP5015_590(PF04784)(ER)
391615.GP5015_26(PF09317)mitochondrial; (mitochondrial)
391615.GP5015_1257(PF13430)(ER)
391615.GP5015_1274(PF14539)
391615.GP5015_1124(PF04784)
391615.GP5015_89(PF14539)
391615.GP5015_2099(PF14539)
391615.GP5015_20(PF09317)
391615.GP5015_327(PF11815)
391615.GP5015_1085(PF11815)
391615.GP5015_1249(PF13430)not used
391615.GP5015_1495(PF09317)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================