Effective results for Brevundimonas sp. BAL3 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 44
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 15 proteins (0 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391600.BBAL3_1560+ER
391600.BBAL3_3451(PF08856)(ER); (plastid)
391600.BBAL3_751+mitochondrial; (mitochondrial)
391600.BBAL3_2526(PF05118)mitochondrial; (mitochondrial)
391600.BBAL3_2778(PF13871) (PF13872)(plastid)
391600.BBAL3_3426+ER
391600.BBAL3_3216+ER
391600.BBAL3_559+ER
391600.BBAL3_2003+ER
391600.BBAL3_2001(PF10013)(mitochondrial); mitochondrial
391600.BBAL3_1469+ER
391600.BBAL3_2937+ER
391600.BBAL3_895+ER; (ER)
391600.BBAL3_899+mitochondrial
391600.BBAL3_474+ER; (ER)
391600.BBAL3_1504(PF08856)(ER); (plastid)
391600.BBAL3_313+ER
391600.BBAL3_119+(mitochondrial)
391600.BBAL3_1969(PF13871) (PF13872)
391600.BBAL3_1051+(PF00342)
391600.BBAL3_999(PF05118)(ER)
391600.BBAL3_1796(PF13871) (PF13872)
391600.BBAL3_2849+
391600.BBAL3_2189(PF00342)
391600.BBAL3_1636+
391600.BBAL3_1366+
391600.BBAL3_3119+
391600.BBAL3_3112+
391600.BBAL3_1629+
391600.BBAL3_3449+
391600.BBAL3_3050(PF01786)
391600.BBAL3_2521+
391600.BBAL3_1963+
391600.BBAL3_922+
391600.BBAL3_2414+
391600.BBAL3_3146+
391600.BBAL3_2163+
391600.BBAL3_2289+
391600.BBAL3_719+
391600.BBAL3_1103(PF01786)
391600.BBAL3_1105(PF05118)
391600.BBAL3_1459+
391600.BBAL3_3177(PF00342)
391600.BBAL3_2644+
391600.BBAL3_261+
391600.BBAL3_2137+
391600.BBAL3_3030+
391600.BBAL3_1524+
391600.BBAL3_3253+
391600.BBAL3_1892+
391600.BBAL3_513+
391600.BBAL3_1533(PF05118)
391600.BBAL3_2368+
391600.BBAL3_652+
391600.BBAL3_1416+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================