Effective results for Roseobacter sp. CCS2 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (2 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
391593.RCCS2_03102				(PF12849)	(mitochondrial)
391593.RCCS2_08614				PF04750	ER
391593.RCCS2_05184				(PF04413)	ER
391593.RCCS2_00482				(PF12849)	ER
391593.RCCS2_08739				(PF12849)	ER
391593.RCCS2_04689				(PF11977)	ER; (ER)
391593.RCCS2_08224				(PF03209)	ER
391593.RCCS2_00532				(PF08856)	(mitochondrial); mitochondrial
391593.RCCS2_08959				(PF12849)	ER
391593.RCCS2_09929				(PF13704)	mitochondrial
391593.RCCS2_00287				(PF16350)	ER
391593.RCCS2_00282				(PF16350)	ER
391593.RCCS2_13169				(PF13704)	ER; mitochondrial
391593.RCCS2_09934				(PF13704)	mitochondrial
391593.RCCS2_00689				(PF12849)	(mitochondrial)
391593.RCCS2_13459				(PF16350)	(ER)
391593.RCCS2_05179				(PF04413)	(mitochondrial)
391593.RCCS2_14189				(PF16350)	(mitochondrial)
391593.RCCS2_06679				(PF09585)	(mitochondrial)
391593.RCCS2_13774				(PF02485)	(mitochondrial)
391593.RCCS2_09939				(PF02485)	(plastid)
391593.RCCS2_06744				(PF16350)
391593.RCCS2_16069				(PF10013)	not used
391593.RCCS2_07139				(PF16095)
391593.RCCS2_07224				(PF06999)
391593.RCCS2_12929				PF12349
391593.RCCS2_06764				(PF16350)
391593.RCCS2_09434				(PF03209)
391593.RCCS2_11032				(PF09458)
391593.RCCS2_10810				(PF04413)
391593.RCCS2_14944				(PF01457)
391593.RCCS2_01259				(PF13430)
391593.RCCS2_14714				(PF13704)
391593.RCCS2_11192				(PF12849)
391593.RCCS2_06684				(PF09585)
391593.RCCS2_00437				(PF13704)
391593.RCCS2_10680				(PF12849)
391593.RCCS2_00537				(PF08856)
391593.RCCS2_13839				(PF06999)
391593.RCCS2_10335				(PF13430)
391593.RCCS2_03002				(PF05292)
391593.RCCS2_03007				(PF05292)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================