Effective results for Roseobacter sp. GAI101 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 45 proteins (0 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391589.RGAI101_80(PF03480)(ER)
391589.RGAI101_3250(PF03480)ER
391589.RGAI101_3251(PF03480)ER
391589.RGAI101_130(PF03480)mitochondrial; (mitochondrial)
391589.RGAI101_3262(PF03480)(ER)
391589.RGAI101_1839(PF03480)ER
391589.RGAI101_3843(PF05830)mitochondrial
391589.RGAI101_4031(PF03480)(mitochondrial); mitochondrial
391589.RGAI101_429(PF11977)ER
391589.RGAI101_3470(PF03480)ER
391589.RGAI101_1575(PF03480)ER; (ER)
391589.RGAI101_2981(PF13704)(ER)
391589.RGAI101_1187(PF03480)(mitochondrial)
391589.RGAI101_3801(PF03480)ER
391589.RGAI101_2197(PF03480)ER
391589.RGAI101_218(PF03480)ER; (ER)
391589.RGAI101_1334(PF03480)ER
391589.RGAI101_2836(PF03480)ER; (ER)
391589.RGAI101_2954(PF03480)(ER)
391589.RGAI101_798(PF03480)(ER)
391589.RGAI101_2743(PF10013)(mitochondrial); not used
391589.RGAI101_2011(PF02485)plastid
391589.RGAI101_3282(PF03480)(plastid)
391589.RGAI101_3850(PF03480)mitochondrial
391589.RGAI101_1306(PF14145)(mitochondrial)
391589.RGAI101_813(PF13704)
391589.RGAI101_2578(PF09585)
391589.RGAI101_968(PF09585)
391589.RGAI101_4181(PF13704)
391589.RGAI101_4182(PF03480)
391589.RGAI101_3342(PF09731)
391589.RGAI101_3664(PF13704)
391589.RGAI101_1013(PF01179)
391589.RGAI101_3283(PF05686)
391589.RGAI101_437(PF03480)
391589.RGAI101_935(PF01179)
391589.RGAI101_619(PF16952)
391589.RGAI101_2466(PF13704)
391589.RGAI101_186(PF03480)
391589.RGAI101_1890(PF02485)
391589.RGAI101_1949(PF02460)
391589.RGAI101_154(PF14145)
391589.RGAI101_237(PF03480)
391589.RGAI101_2314(PF09458)
391589.RGAI101_953(PF03480)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================