Metamenu

Effective results for Helicobacter acinonychis str. Sheeba (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 42 proteins (0 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
382638.Hac_0533+(PF01535)ER
382638.Hac_1382+ER
382638.Hac_0995+(mitochondrial)
382638.Hac_0835(PF01755)ER; (ER)
382638.Hac_0741(PF01755)(mitochondrial)
382638.Hac_0749+ER
382638.Hac_0751+(ER)
382638.Hac_1478+ER
382638.Hac_0805+ER
382638.Hac_1450+ER
382638.Hac_1056+mitochondrial
382638.Hac_0270+ER
382638.Hac_0005+ER
382638.Hac_1226+ER
382638.Hac_1718+ER
382638.Hac_1397+ER
382638.Hac_1171+ER
382638.Hac_0142+(mitochondrial)
382638.Hac_0899+ER
382638.Hac_1387+(mitochondrial)
382638.Hac_0578+ER
382638.Hac_0164+ER
382638.Hac_0367+ER
382638.Hac_0360(PF00145)mitochondrial; (mitochondrial)
382638.Hac_1368+ER
382638.Hac_0940+(mitochondrial)
382638.Hac_1339(PF04098)(mitochondrial)
382638.Hac_1479+(mitochondrial)
382638.Hac_0481(PF00852)plastid
382638.Hac_0925(PF01755)(mitochondrial)
382638.Hac_0093+(PF00145)
382638.Hac_0094(PF00145)(ER)
382638.Hac_0627(PF07510) (PF03235)
382638.Hac_0187+(PF01555)
382638.Hac_0219+
382638.Hac_0371+
382638.Hac_0193+
382638.Hac_0342(PF01501)
382638.Hac_1348(PF01555)
382638.Hac_1125+
382638.Hac_1656+
382638.Hac_1016(PF01555)
382638.Hac_0520(PF01555)
382638.Hac_1063(PF00852)
382638.Hac_0755+
382638.Hac_0229+
382638.Hac_0320+
382638.Hac_0034+
382638.Hac_0021(PF01501)
382638.Hac_0803+
382638.Hac_0309+
382638.Hac_0871+
382638.Hac_0879(PF03235)
382638.Hac_1276+
382638.Hac_1272+
382638.Hac_1058+
382638.Hac_1050+
382638.Hac_0477(PF07510)
382638.Hac_0008+
382638.Hac_0007(PF01555)
382638.Hac_0915+
382638.Hac_1516+
382638.Hac_1515+
382638.Hac_1512(PF01555)
382638.Hac_1738+
382638.Hac_1213(PF00145)
382638.Hac_0851+
382638.Hac_1721(PF01555)
382638.Hac_0581+
382638.Hac_0069+
382638.Hac_1085+
382638.Hac_0595(PF00145)
382638.Hac_0283(PF00145)
382638.Hac_1098+
382638.Hac_1417(PF01555)
382638.Hac_0616(PF03235)
382638.Hac_0614(PF07510)
382638.Hac_0436(PF01501)
382638.Hac_0545+
382638.Hac_1559(PF01501)
382638.Hac_0731(PF07510)
382638.Hac_0732(PF03235)
382638.Hac_0427+
382638.Hac_0091(PF00145)not used
382638.Hac_1545(PF01501)
382638.Hac_1386+
382638.Hac_0966(PF00145)
382638.Hac_0961+
382638.Hac_0562+
382638.Hac_0085(PF01555)
382638.Hac_1285+
382638.Hac_1288+
382638.Hac_0881(PF07510)
382638.Hac_1370+
382638.Hac_1110+
382638.Hac_1115+
382638.Hac_0974+
382638.Hac_0626(PF03235)
382638.Hac_1625+
382638.Hac_0710(PF01555)
382638.Hac_0711(PF01555)
382638.Hac_1107+
382638.Hac_1293+
382638.Hac_1111+
382638.Hac_1560+
382638.Hac_0186(PF01555)
382638.Hac_0185(PF01555)
382638.Hac_0983+
382638.Hac_1636+
382638.Hac_1639+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================