Effective results for Pseudomonas stutzeri A1501 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 37 proteins (1 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
379731.PST_0728(PF00639)(mitochondrial)
379731.PST_2203(PF00639)(mitochondrial)
379731.PST_3527(PF02239)ER
379731.PST_0916(PF06293)(mitochondrial); mitochondrial
379731.PST_3532(PF02239)ER
379731.PST_3538(PF02239)ER
379731.PST_3792(PF08732)(mitochondrial)
379731.PST_1445(PF06884)ER
379731.PST_1430(PF09834)ER
379731.PST_1606(PF12513)(mitochondrial)
379731.PST_3135(PF12483)ER
379731.PST_2283(PF02239)ER
379731.PST_2133(PF09834)(plastid)
379731.PST_3429(PF13384)
379731.PST_1595(PF02482)
379731.PST_0301(PF02482)
379731.PST_3692(PF00639)
379731.PST_2878(PF13384)
379731.PST_3831(PF06293)
379731.PST_3829(PF06293)
379731.PST_0900(PF00639)
379731.PST_0593PF07984
379731.PST_3104(PF13384)
379731.PST_0582(PF08482)
379731.PST_0583(PF08482)
379731.PST_1357(PF00639)
379731.PST_0552(PF13384)
379731.PST_1561(PF02482)
379731.PST_2413(PF02460)
379731.PST_0700(PF13384)
379731.PST_1030(PF02482)
379731.PST_3843(PF06293)
379731.PST_3846(PF06293)
379731.PST_3844(PF06293)
379731.PST_3845(PF06293)
379731.PST_3712(PF08482)
379731.PST_1806(PF16485)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================