Metamenu

Effective results for Kocuria rhizophila DC2201 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
378753.KRH_20210(PF08310)mitochondrial
378753.KRH_12480(PF08310)ER
378753.KRH_11920(PF01121)mitochondrial
378753.KRH_17230(PF08310)ER
378753.KRH_12530(PF13579)(mitochondrial)
378753.KRH_03060(PF08310)(mitochondrial); (plastid)
378753.KRH_15330(PF08310)ER
378753.KRH_18950(PF08310)ER
378753.KRH_08960(PF13579)(ER)
378753.KRH_20550(PF13579)(ER)
378753.KRH_13190(PF13579)
378753.KRH_18960(PF13579)
378753.KRH_22440(PF00755)
378753.KRH_11910(PF01121)
378753.KRH_12640(PF13579)
378753.KRH_04850PF08213not used
378753.KRH_12520(PF13579)
378753.KRH_20450(PF13579)
378753.KRH_18580(PF03015)
378753.KRH_21170(PF07286)not used
378753.KRH_21160(PF07286)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================