Metamenu

Effective results for Lactobacillus salivarius UCC118 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 23 proteins (1 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
362948.LSL_0969PF09805ER
362948.LSL_1558(PF05704)(mitochondrial)
362948.LSL_0609(PF01610)
362948.LSL_1184(PF01610)
362948.LSL_0928(PF01610)
362948.LSL_1339(PF01610)
362948.LSL_0312(PF01610)
362948.LSL_1301(PF01610)
362948.LSL_0498(PF01610)
362948.LSL_0971(PF05495)
362948.LSL_1563(PF01610)
362948.LSL_0228(PF13331)
362948.LSL_1015(PF01610)
362948.LSL_0984(PF14307)
362948.LSL_0983(PF14307)
362948.LSL_1342(PF01610)
362948.LSL_0407(PF01610)
362948.LSL_0414(PF01610)
362948.LSL_1381(PF01610)
362948.LSL_1386(PF01610)
362948.LSL_1398(PF13331)
362948.LSL_1624(PF01610)
362948.LSL_1471(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================