Effective results for Pseudomonas putida F1 (eggnog40)

Summary

Number of putative secreted proteins: 743
- Predicted by EffectiveT3: 217 (high confidence), 346 (low confidence)
- Predicted by EffectiveCCBD: 16 within, 16 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 108
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 40 proteins (0 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
351746.Pput_1999+(mitochondrial)
351746.Pput_4059+mitochondrial
351746.Pput_3021(PF10013)mitochondrial
351746.Pput_3484+(mitochondrial); (plastid)
351746.Pput_2242(PF01852)ER
351746.Pput_1302+ER
351746.Pput_1707(>)ER
351746.Pput_0342+(ER); (mitochondrial)
351746.Pput_4597+ER
351746.Pput_3873(<)ER
351746.Pput_5188(+)+(mitochondrial)
351746.Pput_1531(>)ER
351746.Pput_4851+(ER)
351746.Pput_4616+(mitochondrial); plastid
351746.Pput_3915+ER
351746.Pput_0798(PF13488)(ER)
351746.Pput_3049+mitochondrial; (plastid)
351746.Pput_2404(PF12806) (PF12418)(mitochondrial)
351746.Pput_2405(>)ER
351746.Pput_1782+mitochondrial
351746.Pput_1252+ER
351746.Pput_0254(>)ER
351746.Pput_1332+ER
351746.Pput_0042+ER
351746.Pput_2935+ER
351746.Pput_0446+ER
351746.Pput_3086+ER
351746.Pput_2520+ER
351746.Pput_1659(PF01852)ER
351746.Pput_1657+ER
351746.Pput_0270(PF13488)ER
351746.Pput_1274(PF13488)ER
351746.Pput_1279(PF06039)ER
351746.Pput_1904(PF13488)ER
351746.Pput_4044(>)(ER)
351746.Pput_1164(+)+ER; (ER)
351746.Pput_1460(<)(ER); ER
351746.Pput_1863(PF06884)ER
351746.Pput_0128(<)ER
351746.Pput_0987(>)(mitochondrial)
351746.Pput_1296+ER
351746.Pput_4352+ER
351746.Pput_0437+ER
351746.Pput_2767(PF06039)ER
351746.Pput_0368+ER
351746.Pput_2164+ER
351746.Pput_2828+ER
351746.Pput_4234+ER
351746.Pput_3281+ER
351746.Pput_3114+(mitochondrial); plastid
351746.Pput_4917(+)(PF10142)ER
351746.Pput_2968+ER
351746.Pput_3844(>)ER
351746.Pput_0047+ER
351746.Pput_1953(>)mitochondrial; (ER)
351746.Pput_2734+ER
351746.Pput_0609(PF07678)ER
351746.Pput_2102+ER; (ER)
351746.Pput_3974+ER
351746.Pput_3216(<)ER
351746.Pput_1560(>)ER
351746.Pput_0541+mitochondrial
351746.Pput_1968(>)ER
351746.Pput_2833+ER
351746.Pput_2832(>)ER
351746.Pput_2837+ER
351746.Pput_2559+(ER)
351746.Pput_3126+(ER)
351746.Pput_0060+ER
351746.Pput_3232+(ER)
351746.Pput_1226+ER
351746.Pput_2336+ER
351746.Pput_2334+mitochondrial; (mitochondrial)
351746.Pput_2293+ER
351746.Pput_0372(PF06293)ER; (ER)
351746.Pput_4894+(mitochondrial)
351746.Pput_4891+ER
351746.Pput_3712+ER
351746.Pput_0484(>)mitochondrial; (mitochondrial)
351746.Pput_3489+ER
351746.Pput_0623+ER
351746.Pput_5215+(ER)
351746.Pput_5245(PF13582)ER
351746.Pput_0662+ER
351746.Pput_0022+ER
351746.Pput_2290+(ER)
351746.Pput_1224(>)ER
351746.Pput_0063+(mitochondrial)
351746.Pput_0826(>)ER; (ER)
351746.Pput_2511+(PF10685)
351746.Pput_3841(<)(plastid)
351746.Pput_2460+(plastid)
351746.Pput_3594(+)(mitochondrial)
351746.Pput_3205(PF04303)(mitochondrial)
351746.Pput_2243(+)(mitochondrial)
351746.Pput_1345(+)(mitochondrial)
351746.Pput_1343(+)(mitochondrial); plastid
351746.Pput_5265+(mitochondrial)
351746.Pput_1474+(plastid)
351746.Pput_3693(PF12806) (PF12418)
351746.Pput_3874+(ER)
351746.Pput_2254+(ER)
351746.Pput_5076+(plastid)
351746.Pput_1534(+)(ER)
351746.Pput_3460(+)(mitochondrial)
351746.Pput_0950(+)(mitochondrial)
351746.Pput_2220(PF12806) (PF12418)
351746.Pput_2130(+)ER
351746.Pput_1321(+)ER
351746.Pput_4827(+)mitochondrial
351746.Pput_4821(PF12806) (PF12418)
351746.Pput_4629+(ER)
351746.Pput_2532(+)mitochondrial; (mitochondrial)
351746.Pput_1817+(plastid)
351746.Pput_2785(+)mitochondrial
351746.Pput_1250(+)(ER)
351746.Pput_0571+(ER); not used
351746.Pput_2126++
351746.Pput_2686+plastid
351746.Pput_3082+(plastid)
351746.Pput_3333(+)(ER)
351746.Pput_2114+plastid
351746.Pput_1473++
351746.Pput_0059+(plastid)
351746.Pput_4155+plastid
351746.Pput_1489+plastid
351746.Pput_1465+plastid
351746.Pput_2700(+)(mitochondrial); (plastid)
351746.Pput_1862+(PF10685)
351746.Pput_0989(>)(mitochondrial)
351746.Pput_3250(+)mitochondrial
351746.Pput_1448(+)+(plastid)
351746.Pput_5019+(ER)
351746.Pput_4261+(mitochondrial)
351746.Pput_3393+(mitochondrial)
351746.Pput_1618+(ER)
351746.Pput_4010+(plastid)
351746.Pput_0039(<)(mitochondrial)
351746.Pput_3617(+)(ER)
351746.Pput_0703(+)(ER)
351746.Pput_1043(+)(ER)
351746.Pput_4895(+)mitochondrial; (mitochondrial)
351746.Pput_0388++
351746.Pput_0396(PF12806) (PF12418)
351746.Pput_0394(PF12806) (PF12418)
351746.Pput_0171+(plastid)
351746.Pput_4413(+)(mitochondrial); (plastid)
351746.Pput_2956(+)ER
351746.Pput_0779(PF06039)(ER)
351746.Pput_3924+(plastid)
351746.Pput_2059(+)(mitochondrial)
351746.Pput_3241+(<)
351746.Pput_4046(+)(mitochondrial)
351746.Pput_1151+(mitochondrial)
351746.Pput_0977(<)+
351746.Pput_2933(+)ER
351746.Pput_1974+plastid
351746.Pput_3343(+)(mitochondrial)
351746.Pput_4271(+)(mitochondrial)
351746.Pput_4279(+)ER
351746.Pput_2202+(plastid)
351746.Pput_2665(PF12806) (PF12418)
351746.Pput_1761+(plastid)
351746.Pput_0369(PF06293)(mitochondrial)
351746.Pput_3721(+)mitochondrial
351746.Pput_3850+(ER)
351746.Pput_4913(+)(ER)
351746.Pput_2980(+)ER; (ER)
351746.Pput_2298+(ER)
351746.Pput_2115(+)+(mitochondrial)
351746.Pput_0674+(plastid)
351746.Pput_0825(+)ER
351746.Pput_1996+
351746.Pput_4881+
351746.Pput_4054(+)(plastid)
351746.Pput_3849+
351746.Pput_2469+
351746.Pput_2467(+)plastid
351746.Pput_0640+
351746.Pput_2644+
351746.Pput_4675+
351746.Pput_2248+
351746.Pput_3189+
351746.Pput_2638+
351746.Pput_1306+
351746.Pput_1341+
351746.Pput_5086+
351746.Pput_0832(>)
351746.Pput_1522+
351746.Pput_1475+
351746.Pput_1478+
351746.Pput_3058(+)+
351746.Pput_2503+
351746.Pput_1837+
351746.Pput_2587+
351746.Pput_3270+
351746.Pput_2090+
351746.Pput_2259+
351746.Pput_2252+
351746.Pput_1891+
351746.Pput_0984+
351746.Pput_0271+
351746.Pput_5092(+)+
351746.Pput_1758+
351746.Pput_1756+
351746.Pput_1528+
351746.Pput_0276(>)
351746.Pput_5074+
351746.Pput_1272+
351746.Pput_5183+
351746.Pput_0337+
351746.Pput_1535+
351746.Pput_0804+
351746.Pput_0802(<)
351746.Pput_0803(+)(<)
351746.Pput_0800+not used
351746.Pput_0243+
351746.Pput_0245+
351746.Pput_4109(>)
351746.Pput_4583+
351746.Pput_3685(PF04303)
351746.Pput_3687+
351746.Pput_0796+
351746.Pput_0062(+)+
351746.Pput_3044+
351746.Pput_2402(+)+
351746.Pput_0118+
351746.Pput_2795+
351746.Pput_3268+
351746.Pput_3267(+)ER
351746.Pput_2225+
351746.Pput_1780+
351746.Pput_5198+
351746.Pput_5192+
351746.Pput_0327+
351746.Pput_5208+
351746.Pput_5207(+)(plastid)
351746.Pput_5204+
351746.Pput_0818(+)plastid
351746.Pput_1986+
351746.Pput_4620+
351746.Pput_4480+
351746.Pput_2925+
351746.Pput_3826+
351746.Pput_3410+
351746.Pput_3326+
351746.Pput_2237+
351746.Pput_2122+
351746.Pput_0815+
351746.Pput_0393+
351746.Pput_2510+
351746.Pput_5059(+)(mitochondrial)
351746.Pput_0318+
351746.Pput_3295+
351746.Pput_1248(+)(>)
351746.Pput_5236+
351746.Pput_4631+
351746.Pput_3664(>)
351746.Pput_4014+
351746.Pput_0686+
351746.Pput_2420+
351746.Pput_0445(>)
351746.Pput_3245+
351746.Pput_3537+
351746.Pput_2680+
351746.Pput_0888+
351746.Pput_4001(+)plastid
351746.Pput_4558(+)(plastid)
351746.Pput_4008+
351746.Pput_1495+
351746.Pput_5043(PF00303)
351746.Pput_5048(PF00303)
351746.Pput_4792(+)(plastid)
351746.Pput_0272+
351746.Pput_4798+
351746.Pput_3033(+)(ER)
351746.Pput_3657(+)(plastid)
351746.Pput_4151(PF06414)
351746.Pput_1872+
351746.Pput_3433(PF04303)
351746.Pput_3430+
351746.Pput_0453(<)
351746.Pput_2536(+)(plastid)
351746.Pput_5261+
351746.Pput_4760+
351746.Pput_5264(+)+
351746.Pput_0790+
351746.Pput_0742+
351746.Pput_0362+
351746.Pput_3253+
351746.Pput_1643+
351746.Pput_3529(+)(plastid)
351746.Pput_1484+
351746.Pput_1483(>)
351746.Pput_0663(>)
351746.Pput_1461(>)
351746.Pput_0201+
351746.Pput_1265+
351746.Pput_4696+
351746.Pput_0510+
351746.Pput_3646+
351746.Pput_0197+
351746.Pput_1860+
351746.Pput_0429+
351746.Pput_4210+
351746.Pput_4215(>)
351746.Pput_2355(+)(plastid)
351746.Pput_0733+
351746.Pput_0734+
351746.Pput_4287+
351746.Pput_3357(>)
351746.Pput_4876(+)(mitochondrial)
351746.Pput_4986+
351746.Pput_2173(>)
351746.Pput_1640+
351746.Pput_5028+
351746.Pput_1311+
351746.Pput_1452+
351746.Pput_1074(PF01129)
351746.Pput_0850(>)
351746.Pput_2231(+)+
351746.Pput_3404+
351746.Pput_1855+
351746.Pput_0181+
351746.Pput_5144(+)plastid
351746.Pput_0189+
351746.Pput_4990+
351746.Pput_4227+
351746.Pput_2906+
351746.Pput_0727+
351746.Pput_3113+
351746.Pput_3360+
351746.Pput_3571+
351746.Pput_3162+
351746.Pput_2160+
351746.Pput_2878(<)
351746.Pput_2013+
351746.Pput_1662(+)(mitochondrial)
351746.Pput_4718+
351746.Pput_5014(PF00303)
351746.Pput_1594(>)
351746.Pput_4863+
351746.Pput_3629+
351746.Pput_3628+
351746.Pput_4166(<)
351746.Pput_4989+
351746.Pput_4347+
351746.Pput_1935+
351746.Pput_2572(+)(mitochondrial)
351746.Pput_4236+
351746.Pput_2378(>)
351746.Pput_2379+
351746.Pput_3287(+)(plastid)
351746.Pput_0919+
351746.Pput_3378+
351746.Pput_3171+
351746.Pput_2152+
351746.Pput_4141+
351746.Pput_4140+
351746.Pput_2394+
351746.Pput_1027+
351746.Pput_2094(+)(mitochondrial)
351746.Pput_5161+
351746.Pput_0744+
351746.Pput_5000+
351746.Pput_5002+
351746.Pput_4750+
351746.Pput_0524+
351746.Pput_3612(>)
351746.Pput_4263+
351746.Pput_2250+
351746.Pput_4249+
351746.Pput_2565+
351746.Pput_2962+
351746.Pput_2960+
351746.Pput_1144+
351746.Pput_2709+
351746.Pput_2703(+)(plastid)
351746.Pput_5110+
351746.Pput_3146(+)(plastid)
351746.Pput_2493+
351746.Pput_2491(+)(PF10685)
351746.Pput_3100(>)
351746.Pput_3455+
351746.Pput_1609+
351746.Pput_2023(<)
351746.Pput_4243+
351746.Pput_1558+
351746.Pput_1133(+)(plastid)
351746.Pput_5108+
351746.Pput_0555+
351746.Pput_4746(>)
351746.Pput_5238+
351746.Pput_0179+
351746.Pput_3772+
351746.Pput_4416+
351746.Pput_4528+
351746.Pput_1952+
351746.Pput_2674+
351746.Pput_4255(>)
351746.Pput_3802(+)(ER)
351746.Pput_3557+
351746.Pput_3808+
351746.Pput_2821(+)+
351746.Pput_3395+
351746.Pput_2853+
351746.Pput_0045+
351746.Pput_2043(>)
351746.Pput_2075+
351746.Pput_1437+
351746.Pput_0943(PF06293)
351746.Pput_1052+
351746.Pput_5285(+)ER; not used
351746.Pput_1895+
351746.Pput_1890+
351746.Pput_4734+
351746.Pput_3707(<)
351746.Pput_4066+
351746.Pput_3834(+)+
351746.Pput_0766+
351746.Pput_2724(PF13816)
351746.Pput_0613+
351746.Pput_0694+
351746.Pput_2050+
351746.Pput_1539+
351746.Pput_4877+
351746.Pput_1626+
351746.Pput_1396(>)
351746.Pput_1713+
351746.Pput_5120+
351746.Pput_0370(PF06293)
351746.Pput_0371(PF06293)
351746.Pput_1881+
351746.Pput_0111+
351746.Pput_1971(+)(mitochondrial)
351746.Pput_0114+
351746.Pput_4096+
351746.Pput_0617+
351746.Pput_0281+
351746.Pput_1719+
351746.Pput_0590+
351746.Pput_2755+
351746.Pput_3130+
351746.Pput_4471+
351746.Pput_4042(+)(plastid)
351746.Pput_2067+
351746.Pput_2064(+)(plastid)
351746.Pput_0410+
351746.Pput_1360(PF04303)
351746.Pput_1364+
351746.Pput_1365+
351746.Pput_3623+not used
351746.Pput_1500+
351746.Pput_5133+
351746.Pput_1181+
351746.Pput_1210+
351746.Pput_0565(PF06414)
351746.Pput_0985+
351746.Pput_3031+
351746.Pput_4914(+)(mitochondrial)
351746.Pput_3985+
351746.Pput_3107+
351746.Pput_4107(<)
351746.Pput_4882+
351746.Pput_2185+
351746.Pput_1251+
351746.Pput_3989(>)
351746.Pput_0351+
351746.Pput_0210+
351746.Pput_1370+
351746.Pput_4707+
351746.Pput_4706(>)
351746.Pput_5096+
351746.Pput_1197+
351746.Pput_3190(+)
351746.Pput_0132(+)
351746.Pput_3731(+)
351746.Pput_3939(+)
351746.Pput_4186(+)
351746.Pput_4684(+)
351746.Pput_1858(+)
351746.Pput_0136(+)
351746.Pput_3443(+)
351746.Pput_3441(+)
351746.Pput_0646(+)
351746.Pput_2881(+)
351746.Pput_3930(+)
351746.Pput_2144(+)
351746.Pput_2080(+)
351746.Pput_2085(+)
351746.Pput_1347(+)
351746.Pput_4199(+)
351746.Pput_1742(+)
351746.Pput_5089(+)
351746.Pput_2610(+)
351746.Pput_1538(+)
351746.Pput_0906(+)
351746.Pput_4840(+)
351746.Pput_4119(+)
351746.Pput_3054(+)
351746.Pput_3479(+)
351746.Pput_1152(+)
351746.Pput_3870(+)
351746.Pput_2873(+)
351746.Pput_1409(+)
351746.Pput_3276(+)
351746.Pput_3301(+)
351746.Pput_2253(+)
351746.Pput_4040(+)
351746.Pput_3855(+)
351746.Pput_4793(+)
351746.Pput_5253(+)
351746.Pput_1755(+)
351746.Pput_1353(+)
351746.Pput_1155(+)
351746.Pput_1273(+)
351746.Pput_0246(+)
351746.Pput_3917(+)
351746.Pput_4585(+)
351746.Pput_4926(+)
351746.Pput_3461(+)
351746.Pput_2318(+)
351746.Pput_2311(+)
351746.Pput_2796(+)
351746.Pput_2791(+)
351746.Pput_3314(+)
351746.Pput_1459(+)
351746.Pput_1035(+)
351746.Pput_4274(+)
351746.Pput_1811(+)
351746.Pput_1190(+)
351746.Pput_3899(+)
351746.Pput_3783(+)
351746.Pput_2307(+)
351746.Pput_3097(+)
351746.Pput_3098(+)
351746.Pput_3327(+)
351746.Pput_2235(+)
351746.Pput_3502(+)
351746.Pput_0812(+)
351746.Pput_2127(+)
351746.Pput_2623(+)
351746.Pput_1024(+)
351746.Pput_1338(+)
351746.Pput_0268(+)
351746.Pput_5305(+)
351746.Pput_5233(+)
351746.Pput_4633(+)
351746.Pput_3669(+)
351746.Pput_3069(+)
351746.Pput_3064(+)
351746.Pput_4490(+)
351746.Pput_4493(+)
351746.Pput_1801(+)
351746.Pput_1804(+)
351746.Pput_1691(+)
351746.Pput_2756(+)
351746.Pput_2758(+)
351746.Pput_2183(+)
351746.Pput_3331(+)
351746.Pput_0895(+)
351746.Pput_2116(+)
351746.Pput_2118(+)
351746.Pput_1014(+)
351746.Pput_1656(+)
351746.Pput_1492(+)
351746.Pput_2063(+)
351746.Pput_0304(+)
351746.Pput_0302(+)
351746.Pput_0277(+)
351746.Pput_2529(+)
351746.Pput_3419(+)
351746.Pput_4152+
351746.Pput_2434(+)
351746.Pput_3508(+)
351746.Pput_2323(+)
351746.Pput_2265(+)
351746.Pput_2698(+)
351746.Pput_3345(+)
351746.Pput_1231(+)
351746.Pput_0348(+)
351746.Pput_1114(+)
351746.Pput_0837(+)
351746.Pput_3256(+)
351746.Pput_4579(+)
351746.Pput_1481(+)
351746.Pput_1482(+)
351746.Pput_0990(+)
351746.Pput_0206(+)
351746.Pput_4694(+)
351746.Pput_0512(+)
351746.Pput_0514(+)
351746.Pput_4149(+)
351746.Pput_2913(+)
351746.Pput_0664(+)
351746.Pput_0739(+)
351746.Pput_1318(+)
351746.Pput_1113(+)
351746.Pput_2172(+)
351746.Pput_4028(+)
351746.Pput_1582(+)
351746.Pput_3745(+)
351746.Pput_3188(+)
351746.Pput_4358(+)not used
351746.Pput_1923(+)
351746.Pput_2347(+)
351746.Pput_3362(+)
351746.Pput_3363(+)
351746.Pput_2120(+)
351746.Pput_2165(+)
351746.Pput_2017(+)
351746.Pput_4606(+)
351746.Pput_4665(+)
351746.Pput_1669(+)
351746.Pput_5012(+)
351746.Pput_4768(+)
351746.Pput_0225(+)
351746.Pput_3959(+)
351746.Pput_4169(+)
351746.Pput_4982(+)
351746.Pput_4987(+)
351746.Pput_2430(+)
351746.Pput_4436(+)
351746.Pput_3195(+)
351746.Pput_0109(+)
351746.Pput_1981(+)
351746.Pput_1931(+)
351746.Pput_2976(+)
351746.Pput_0717(+)
351746.Pput_4256(+)
351746.Pput_0190(+)
351746.Pput_0050(+)
351746.Pput_0741(+)
351746.Pput_1729(+)
351746.Pput_0743(+)
351746.Pput_4359(+)
351746.Pput_0239(+)
351746.Pput_4754(+)
351746.Pput_2918(+)
351746.Pput_0858(+)
351746.Pput_3767(+)
351746.Pput_3308(+)
351746.Pput_2568(+)
351746.Pput_2563(+)
351746.Pput_3810(+)
351746.Pput_0704(+)
351746.Pput_4557(+)
351746.Pput_2637(+)
351746.Pput_2381(+)
351746.Pput_2037(+)
351746.Pput_4240(+)
351746.Pput_5099(+)
351746.Pput_1607(+)
351746.Pput_4345(+)
351746.Pput_4449(+)
351746.Pput_5297(+)
351746.Pput_3558(+)
351746.Pput_3180(+)
351746.Pput_1589(+)
351746.Pput_0602+
351746.Pput_0844(+)
351746.Pput_2363(+)
351746.Pput_4089(+)
351746.Pput_4797(+)
351746.Pput_1633(+)
351746.Pput_1708(+)
351746.Pput_1099(+)
351746.Pput_1419(+)
351746.Pput_2921(+)
351746.Pput_2808(+)
351746.Pput_1050(+)
351746.Pput_5288(+)
351746.Pput_0380(+)
351746.Pput_1960(+)
351746.Pput_3705(+)
351746.Pput_4269(+)
351746.Pput_2936(+)
351746.Pput_0765(+)
351746.Pput_2838(+)
351746.Pput_2171(+)
351746.Pput_3128(+)
351746.Pput_3880(+)
351746.Pput_2598(+)
351746.Pput_3234(+)
351746.Pput_3794(+)
351746.Pput_5201(+)
351746.Pput_0970(+)
351746.Pput_2726(+)
351746.Pput_0297(+)
351746.Pput_1153(+)
351746.Pput_0377(+)
351746.Pput_1885(+)
351746.Pput_4656(+)
351746.Pput_4655(+)
351746.Pput_4727(+)
351746.Pput_1813(+)
351746.Pput_1973(+)
351746.Pput_0113+
351746.Pput_4475(+)
351746.Pput_3829(+)
351746.Pput_0592(+)
351746.Pput_2425(+)
351746.Pput_2200(+)
351746.Pput_2998(+)
351746.Pput_2288(+)
351746.Pput_2848(+)
351746.Pput_0670(+)
351746.Pput_2061(+)
351746.Pput_2069(+)
351746.Pput_2904(+)
351746.Pput_1369(+)
351746.Pput_1362(+)
351746.Pput_4531(+)
351746.Pput_0912(+)
351746.Pput_2991(+)
351746.Pput_0160(+)
351746.Pput_1163(+)
351746.Pput_0365(+)
351746.Pput_1213(+)
351746.Pput_1219(+)not used
351746.Pput_4660(+)
351746.Pput_0980(+)
351746.Pput_0290(+)
351746.Pput_3037(+)
351746.Pput_0583(+)
351746.Pput_0581(+)
351746.Pput_0585(+)
351746.Pput_2989(+)
351746.Pput_2982(+)
351746.Pput_4129(+)
351746.Pput_2854(+)
351746.Pput_0630(+)
351746.Pput_2816(+)
351746.Pput_1989(+)
351746.Pput_4007(+)
351746.Pput_4573(+)
351746.Pput_1776(+)
351746.Pput_1778(+)
351746.Pput_4079(+)
351746.Pput_0531(+)
351746.Pput_1209(+)
351746.Pput_0828(+)
351746.Pput_4709(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.4 (4/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.875 (15/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================