Metamenu

Effective results for Chlamydophila pecorum E58 (eggnog40)

Summary

Number of putative secreted proteins: 154
- Predicted by EffectiveT3: 56 (high confidence), 56 (low confidence)
- Predicted by EffectiveCCBD: 6 within, 7 before, 10 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 27 proteins (16 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
331635.G5S_0526(PF03797) PF02415ER
331635.G5S_0620(PF03797) PF02415ER
331635.G5S_0619(PF03797) PF02415ER
331635.G5S_0616(PF03797) PF02415ER; (ER)
331635.G5S_0608(PF03797) PF02415(ER); (plastid)
331635.G5S_0606(PF03797) PF02415ER
331635.G5S_0607(PF03797) PF02415(mitochondrial); mitochondrial
331635.G5S_0245(<)ER
331635.G5S_0349+mitochondrial; (mitochondrial)
331635.G5S_0011(PF08123)ER; (ER)
331635.G5S_0397PF05648(mitochondrial); (plastid)
331635.G5S_0972+ER
331635.G5S_0622(PF03797)ER; (ER)
331635.G5S_0624PF02415ER
331635.G5S_0823(<)ER
331635.G5S_1090PF02415ER; (ER)
331635.G5S_0575+ER
331635.G5S_0617PF02415ER
331635.G5S_0436(<)(ER)
331635.G5S_0956+(mitochondrial); plastid
331635.G5S_0524(>)ER
331635.G5S_0199(>)mitochondrial
331635.G5S_0510+(plastid)
331635.G5S_0015+(mitochondrial)
331635.G5S_0712(+)(ER); (plastid)
331635.G5S_0942+plastid
331635.G5S_0313(+)ER; (ER)
331635.G5S_0613(PF03797) PF02415
331635.G5S_0008(>)(PF07720)
331635.G5S_0689(>)(mitochondrial)
331635.G5S_0435(+)(PF03219)(ER)
331635.G5S_1101+(mitochondrial)
331635.G5S_1032(+)mitochondrial
331635.G5S_0765+plastid
331635.G5S_1103+(mitochondrial)
331635.G5S_0502PF05677(mitochondrial)
331635.G5S_0501PF05677(plastid)
331635.G5S_0029+(plastid)
331635.G5S_0609(PF03797)(ER)
331635.G5S_0079(>)(mitochondrial)
331635.G5S_0072(PF03797) PF02415
331635.G5S_0718(+)(mitochondrial)
331635.G5S_0781+plastid
331635.G5S_0784(PF03219)(ER)
331635.G5S_0978(+)(mitochondrial); mitochondrial
331635.G5S_0232+
331635.G5S_0802+
331635.G5S_0559(+)(>)
331635.G5S_1048(+)(plastid)
331635.G5S_0636+
331635.G5S_0631+
331635.G5S_0163+
331635.G5S_0009+
331635.G5S_0701+
331635.G5S_0114+
331635.G5S_0419(>)
331635.G5S_0934+
331635.G5S_0836+
331635.G5S_0240(<)
331635.G5S_0847+
331635.G5S_0010+
331635.G5S_0590+
331635.G5S_0086(<)
331635.G5S_0085+
331635.G5S_0872(+)PF16015
331635.G5S_0231+
331635.G5S_1051(+)(mitochondrial)
331635.G5S_1055+
331635.G5S_1022+
331635.G5S_1021(+)(PF09825)
331635.G5S_0659(<)
331635.G5S_0124+
331635.G5S_1040+
331635.G5S_1050(>)
331635.G5S_0945+
331635.G5S_0275(PF02201)
331635.G5S_0574+
331635.G5S_0572+
331635.G5S_0316+
331635.G5S_1064(+)(>)
331635.G5S_0611+
331635.G5S_0365(+)(plastid)
331635.G5S_0723(<)
331635.G5S_0729+
331635.G5S_0432+
331635.G5S_0180+
331635.G5S_0919+
331635.G5S_0229+
331635.G5S_0481(+)(PF02201)
331635.G5S_0486+
331635.G5S_0647(+)+
331635.G5S_0131(PF00070)
331635.G5S_0246+
331635.G5S_0276(>)
331635.G5S_0269+
331635.G5S_0508+
331635.G5S_0603+
331635.G5S_0605+
331635.G5S_0070+
331635.G5S_0888+
331635.G5S_0733+
331635.G5S_0103+
331635.G5S_0783+
331635.G5S_0929(PF01823)
331635.G5S_0925+
331635.G5S_0858+
331635.G5S_0992+
331635.G5S_0857+
331635.G5S_0853+
331635.G5S_0670+
331635.G5S_0679+
331635.G5S_0026+
331635.G5S_0027+
331635.G5S_0296(+)
331635.G5S_0236(+)
331635.G5S_0899(+)
331635.G5S_0205(+)
331635.G5S_0344(+)
331635.G5S_0702(+)
331635.G5S_0707(+)
331635.G5S_0518(+)
331635.G5S_0242(+)
331635.G5S_1013(+)
331635.G5S_0871(+)
331635.G5S_0889(+)
331635.G5S_0886(+)
331635.G5S_0900(+)
331635.G5S_0977(+)
331635.G5S_1025(+)
331635.G5S_0650(+)
331635.G5S_0404(+)
331635.G5S_0315(+)
331635.G5S_0007(+)
331635.G5S_0369(+)
331635.G5S_0725(+)
331635.G5S_0535(+)not used
331635.G5S_0189(+)
331635.G5S_0228(+)
331635.G5S_1107(+)
331635.G5S_0324(+)
331635.G5S_1033(+)not used
331635.G5S_0483(+)
331635.G5S_0673(+)
331635.G5S_0500(+)
331635.G5S_0002(+)
331635.G5S_0172(+)
331635.G5S_0379(+)
331635.G5S_0191(+)
331635.G5S_0190(+)
331635.G5S_0779(+)
331635.G5S_0674(+)
331635.G5S_0930(+)
331635.G5S_1060(+)
331635.G5S_0091(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================