Metamenu

Effective results for Simkania negevensis Z (eggnog40)

Summary

Number of putative secreted proteins: 361
- Predicted by EffectiveT3: 120 (high confidence), 120 (low confidence)
- Predicted by EffectiveCCBD: 30 within, 9 before, 28 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 73 proteins (32 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
331113.SNE_A20760+(PF04367)ER
331113.SNE_A05450+(mitochondrial)
331113.SNE_A22540(PF13173)mitochondrial
331113.SNE_A22970(PF13173)mitochondrial; (mitochondrial)
331113.SNE_A11440+ER
331113.SNE_A18000(>)ER
331113.SNE_A04630(PF08719)(mitochondrial)
331113.SNE_A21560(>)ER
331113.SNE_A22760PF04488ER
331113.SNE_A12190+ER
331113.SNE_A17700+(PF00102)(plastid)
331113.SNE_A20500+ER; (ER)
331113.SNE_A03160+(mitochondrial); (plastid)
331113.SNE_A23740+(mitochondrial); (plastid)
331113.SNE_A06350(>)ER
331113.SNE_A09150(PF04367)ER
331113.SNE_A04970+ER
331113.SNE_A22480(PF13173)(mitochondrial)
331113.SNE_A12250PF03219(mitochondrial)
331113.SNE_A09160(PF04367)ER
331113.SNE_A08760(<)mitochondrial
331113.SNE_A05310PF00443(mitochondrial); (plastid)
331113.SNE_A18850(+)(PF01704)(ER); (plastid)
331113.SNE_A22120+ER
331113.SNE_A19410(PF13173)(mitochondrial); mitochondrial
331113.SNE_A03570+ER
331113.SNE_A01160(PF00102)ER
331113.SNE_A04530+mitochondrial
331113.SNE_A04220(PF13173)(mitochondrial)
331113.SNE_A11680(>)ER
331113.SNE_A18440(PF03222)ER
331113.SNE_A09920(PF03647)ER
331113.SNE_A05240+(ER)
331113.SNE_A14420(PF00079)ER
331113.SNE_A19820(>)ER
331113.SNE_A16760PF03269ER
331113.SNE_A15320(PF03222)(mitochondrial)
331113.SNE_A12100+ER
331113.SNE_A22960(PF01637)(mitochondrial)
331113.SNE_A22980(PF03222)ER
331113.SNE_A13530(>)ER
331113.SNE_A09620(PF13173)mitochondrial
331113.SNE_A23110(PF01637)mitochondrial; (mitochondrial)
331113.SNE_A15900(>)ER
331113.SNE_A09390PF15508ER
331113.SNE_A14470(>)ER
331113.SNE_A13230+PF13812 (PF01535)
331113.SNE_A22950(PF03222)ER
331113.SNE_A01920(>)
331113.SNE_A04170+(plastid)
331113.SNE_A18420(PF08719)(plastid)
331113.SNE_A19770+plastid
331113.SNE_A12380+PF00443
331113.SNE_A16930+plastid
331113.SNE_A04330(PF13173)(mitochondrial)
331113.SNE_A13740(+)ER; (ER)
331113.SNE_A05190+(plastid)
331113.SNE_A05750+(plastid)
331113.SNE_A16890+(>)
331113.SNE_A22340+plastid
331113.SNE_A21900+plastid
331113.SNE_A06790(+)(mitochondrial)
331113.SNE_A23080+(ER)
331113.SNE_A22110(+)PF03219(ER)
331113.SNE_A15500(>)(ER)
331113.SNE_A08970(+)ER
331113.SNE_A22330(+)(mitochondrial); (plastid)
331113.SNE_A08200++
331113.SNE_A22800(>)PF02902
331113.SNE_A16460(+)(mitochondrial)
331113.SNE_A06920(+)(ER); ER
331113.SNE_A08990++
331113.SNE_A08420(>)(mitochondrial)
331113.SNE_A15780(PF03222)(ER)
331113.SNE_A17400+(plastid)
331113.SNE_A22630+(plastid)
331113.SNE_A17940+plastid
331113.SNE_A16560+(>)
331113.SNE_A05670(+)(ER)
331113.SNE_A18270+(ER)
331113.SNE_A05060PF03219(ER)
331113.SNE_A12640(+)(ER)
331113.SNE_A12000(>)(ER)
331113.SNE_A00360PF04488(mitochondrial)
331113.SNE_A11170+(plastid)
331113.SNE_A04430+(mitochondrial)
331113.SNE_A17350(+)+(ER)
331113.SNE_A23070(+)(ER)
331113.SNE_A12110(PF04664) PF00443
331113.SNE_A07370(+)(mitochondrial)
331113.SNE_A20670+(plastid)
331113.SNE_A23470+
331113.SNE_A11960+
331113.SNE_A14510+
331113.SNE_A14600+
331113.SNE_A08900+
331113.SNE_A00520+
331113.SNE_A15020+
331113.SNE_A19360+
331113.SNE_A17870PF03200
331113.SNE_A16610(PF16804)
331113.SNE_A00380(+)(ER)
331113.SNE_A07480+
331113.SNE_A00090(<)
331113.SNE_A04280+
331113.SNE_A04910+
331113.SNE_A12950+
331113.SNE_A06190+
331113.SNE_A02380+
331113.SNE_A06990PF05677
331113.SNE_A05760+
331113.SNE_A14670+
331113.SNE_A05380(>)
331113.SNE_A05360(PF01637)
331113.SNE_A12630(+)(PF00454)
331113.SNE_A15030+
331113.SNE_A12700(PF13173)
331113.SNE_A12560(<)
331113.SNE_A16600+
331113.SNE_A12140+
331113.SNE_A08330(>)
331113.SNE_A10940PF02902
331113.SNE_A04290+
331113.SNE_A20620+
331113.SNE_A21140(>)
331113.SNE_A03130PF09825
331113.SNE_A23630+
331113.SNE_A14390+
331113.SNE_A09180+
331113.SNE_A15280(+)(>)
331113.SNE_A01090+
331113.SNE_A12390+
331113.SNE_A12570+
331113.SNE_A13970(+)(plastid)
331113.SNE_A03810+
331113.SNE_A16250+
331113.SNE_A03250+
331113.SNE_A03920(+)(>)
331113.SNE_A03740+
331113.SNE_A23620+
331113.SNE_A05410(+)(ER)
331113.SNE_A20850+
331113.SNE_A19710+
331113.SNE_A14720+
331113.SNE_A11260+
331113.SNE_A08950+
331113.SNE_A19620+
331113.SNE_A18950+
331113.SNE_A01400+
331113.SNE_A10720(+)(ER); not used
331113.SNE_A05400+
331113.SNE_A19700+
331113.SNE_A14220(+)+
331113.SNE_A14640+
331113.SNE_A15510+
331113.SNE_A15600+
331113.SNE_A18920+
331113.SNE_A19520+
331113.SNE_A09540PF05677
331113.SNE_A22290(+)ER; not used
331113.SNE_A19850+
331113.SNE_A12990(+)plastid
331113.SNE_A20870PF14974
331113.SNE_A18550+
331113.SNE_A02960(+)(plastid)
331113.SNE_A14580+
331113.SNE_A06930+
331113.SNE_A22020(>)
331113.SNE_A22750PF04488
331113.SNE_A19860+
331113.SNE_A17840+
331113.SNE_A21820(+)(mitochondrial); not used
331113.SNE_A00480+
331113.SNE_A00330PF04488
331113.SNE_A13010+
331113.SNE_A07300+
331113.SNE_A03220+
331113.SNE_A10470+
331113.SNE_A10270(<)
331113.SNE_A19720+
331113.SNE_A02220(PF13173)
331113.SNE_A15370(<)
331113.SNE_A05020(PF08719)
331113.SNE_A18900+
331113.SNE_A22320+
331113.SNE_A19470(+)PF11789
331113.SNE_A04060+
331113.SNE_A03960+
331113.SNE_A07460+
331113.SNE_A04680(+)plastid
331113.SNE_A13060PF03219
331113.SNE_A17030+
331113.SNE_A04840(>)
331113.SNE_A21070(>)
331113.SNE_A02540(PF01637)
331113.SNE_A09970+
331113.SNE_A16060(>)
331113.SNE_A19400(+)(plastid)
331113.SNE_A19880+
331113.SNE_A22640+
331113.SNE_A04070+
331113.SNE_A22860(PF13173)
331113.SNE_A00310PF04488
331113.SNE_A17000+
331113.SNE_A03200(+)(plastid)
331113.SNE_A03370+
331113.SNE_A19670(<)
331113.SNE_A18670PF03200
331113.SNE_A22010PF05028
331113.SNE_A22780(PF02201)
331113.SNE_A13310PF03200
331113.SNE_A21870+
331113.SNE_A20650(>)
331113.SNE_A07530+
331113.SNE_A03520+
331113.SNE_A02210(+)(PF01704)
331113.SNE_A14540+
331113.SNE_A22680+
331113.SNE_A00370(>)
331113.SNE_A10650+
331113.SNE_A11910+
331113.SNE_A11430+
331113.SNE_A20350+
331113.SNE_A03080+
331113.SNE_A18780(>)
331113.SNE_A19650+
331113.SNE_A02460+
331113.SNE_A21570+
331113.SNE_A18870(PF02201)
331113.SNE_A19780+
331113.SNE_A06810+
331113.SNE_A18890+
331113.SNE_A15840(PF13173)
331113.SNE_A10640+
331113.SNE_A04950(PF01795)
331113.SNE_A20340+
331113.SNE_A06550+
331113.SNE_A06480PF09825
331113.SNE_A06390+
331113.SNE_A02670(+)(mitochondrial)
331113.SNE_A15210+
331113.SNE_A22440(+)ER; not used
331113.SNE_A19350+
331113.SNE_A21620+not used
331113.SNE_A00350PF04488
331113.SNE_A00640+
331113.SNE_A12920PF13639
331113.SNE_A06490(PF03522)
331113.SNE_A18410+
331113.SNE_A19870+
331113.SNE_A14190(>)
331113.SNE_A18250PF07145
331113.SNE_A08650+
331113.SNE_A15860+
331113.SNE_A01290+
331113.SNE_A19340+
331113.SNE_A19800+
331113.SNE_A17760(<)
331113.SNE_A00340PF04488
331113.SNE_A13080(PF00079)
331113.SNE_A10570+
331113.SNE_A20360+
331113.SNE_A08860+
331113.SNE_A08480+
331113.SNE_A19750+
331113.SNE_A22880(PF13173)
331113.SNE_A21510+
331113.SNE_A04360+
331113.SNE_A16590+
331113.SNE_A04960(PF01795)
331113.SNE_A04560(<)not used
331113.SNE_A20170PF12340
331113.SNE_A00880+
331113.SNE_A23580(+)
331113.SNE_A08700(+)
331113.SNE_A03440(+)
331113.SNE_A19740(+)
331113.SNE_A01500(+)
331113.SNE_A10770(+)
331113.SNE_A11820(+)
331113.SNE_A23260(+)
331113.SNE_A16110(+)
331113.SNE_A04160(+)
331113.SNE_A06470(+)
331113.SNE_A02730(+)
331113.SNE_A09520(+)
331113.SNE_A21810(+)
331113.SNE_A00100(+)
331113.SNE_A13840(+)
331113.SNE_A14650(+)
331113.SNE_A20220(+)
331113.SNE_A05740(+)
331113.SNE_A12760(+)
331113.SNE_A09530(+)
331113.SNE_A12160(+)
331113.SNE_A12180(+)
331113.SNE_A19840(+)
331113.SNE_A17710(+)
331113.SNE_A00130(+)not used
331113.SNE_A06670(+)
331113.SNE_A03020(+)
331113.SNE_A11070(+)not used
331113.SNE_A14350(+)
331113.SNE_A08940(+)
331113.SNE_A04260(+)
331113.SNE_A20050(+)
331113.SNE_A23550(+)
331113.SNE_A09950(+)
331113.SNE_A05500(+)
331113.SNE_A09310(+)
331113.SNE_A14360(+)
331113.SNE_A18800(+)
331113.SNE_A12340(+)
331113.SNE_A12230(+)
331113.SNE_A04010(+)
331113.SNE_A21910(+)
331113.SNE_A20060(+)
331113.SNE_A10870(+)
331113.SNE_A11870(+)
331113.SNE_A05510(+)
331113.SNE_A14110(+)
331113.SNE_A01450(+)
331113.SNE_A00490(+)
331113.SNE_A07640(+)
331113.SNE_A12820(+)
331113.SNE_A23750(+)
331113.SNE_A19660(+)
331113.SNE_A14300(+)
331113.SNE_A11130(+)
331113.SNE_A14780(+)
331113.SNE_A13250(+)
331113.SNE_A04670(+)
331113.SNE_A07630(+)
331113.SNE_A23210(+)
331113.SNE_A09010(+)
331113.SNE_A05530(+)
331113.SNE_A03590(+)
331113.SNE_A12020(+)
331113.SNE_A01940(+)
331113.SNE_A19890(+)
331113.SNE_A19640(+)
331113.SNE_A06210(+)
331113.SNE_A17450(+)
331113.SNE_A08520(+)
331113.SNE_A01760(+)
331113.SNE_A16360(+)
331113.SNE_A23530(+)
331113.SNE_A21390(+)
331113.SNE_A14180(+)
331113.SNE_A15690(+)
331113.SNE_A06820(+)
331113.SNE_A08390(+)
331113.SNE_A22040(+)
331113.SNE_A14620(+)
331113.SNE_A05280(+)
331113.SNE_A16010(+)
331113.SNE_A02810(+)
331113.SNE_A18530(+)
331113.SNE_A14270(+)
331113.SNE_A21600(+)
331113.SNE_A20770(+)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================