Effective results for Bifidobacterium breve UCC2003 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 33 proteins (1 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
326426.Bbr_0698				(PF06541)	ER
326426.Bbr_0699				(PF06541)	mitochondrial
326426.Bbr_1142				(PF03644)	ER
326426.Bbr_0030				(PF11175)	(plastid)
326426.Bbr_1719				(PF08354)	(plastid)
326426.Bbr_0439				(PF05704)	(mitochondrial)
326426.Bbr_0453				(PF01695)
326426.Bbr_0455				(PF01695)
326426.Bbr_0691				(PF01695)
326426.Bbr_1856				PF05691
326426.Bbr_1700				(PF03051)
326426.Bbr_0462				(PF01695)
326426.Bbr_1511				(PF01695)
326426.Bbr_1861				(PF11175)
326426.Bbr_1818				(PF03051)
326426.Bbr_0834				(PF01695)
326426.Bbr_0231				(PF06541)
326426.Bbr_1326				(PF14512)
326426.Bbr_1838				(PF01695)
326426.Bbr_1905				(PF13151)
326426.Bbr_1137				(PF14512)
326426.Bbr_1699				(PF03051)
326426.Bbr_1115				(PF01695)
326426.Bbr_0151				(PF01695)
326426.Bbr_1165				(PF01695)
326426.Bbr_1412				(PF01695)
326426.Bbr_0951				(PF01695)
326426.Bbr_1774				(PF01695)
326426.Bbr_1401				(PF01695)
326426.Bbr_1403				(PF01695)
326426.Bbr_1540				(PF01695)
326426.Bbr_0207				(PF01695)
326426.Bbr_0432				(PF01695)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================