Metamenu

Effective results for Pelodictyon phaeoclathratiforme BU-1 (eggnog40)

Summary

Number of putative secreted proteins: 82
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 82 proteins (9 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
324925.Ppha_1562(PF05729) (PF03781)(ER)
324925.Ppha_2427(PF05729) PF13271 (PF03781)
324925.Ppha_2121(PF06250)mitochondrial
324925.Ppha_1300(PF13176)ER
324925.Ppha_0238(PF13176)mitochondrial; (mitochondrial)
324925.Ppha_2512(PF13304)(mitochondrial)
324925.Ppha_1883(PF13304)(mitochondrial)
324925.Ppha_2832(PF13304)(mitochondrial)
324925.Ppha_1079(PF03781)ER
324925.Ppha_0216(PF07720)ER
324925.Ppha_0612(PF00139)ER
324925.Ppha_0735(PF05729) (PF03781)
324925.Ppha_2186(PF05729) (PF03781)
324925.Ppha_2192(PF05729) (PF03781)
324925.Ppha_2339PF08357 (PF03781)
324925.Ppha_0028(PF12159) (PF10693)
324925.Ppha_0741(PF13304)(mitochondrial)
324925.Ppha_1565(PF05729) (PF03781)
324925.Ppha_1553(PF05729) (PF03781)
324925.Ppha_1222(PF13676)(ER)
324925.Ppha_1040(PF13676) (PF03781)
324925.Ppha_1047(PF05729) (PF03781)
324925.Ppha_1942(PF13676) (PF03781)
324925.Ppha_1849(PF13304)(mitochondrial)
324925.Ppha_2344(PF05729) (PF03781)
324925.Ppha_2349(PF05729) (PF03781)
324925.Ppha_1587(PF05729) (PF03781)
324925.Ppha_2738(PF09366)
324925.Ppha_1241PF13271
324925.Ppha_0269(PF13676)
324925.Ppha_1392(PF16114)
324925.Ppha_2637(PF13304)
324925.Ppha_0077(PF09366)
324925.Ppha_1253(PF13676)
324925.Ppha_1810(PF02933)
324925.Ppha_2395(PF06250)
324925.Ppha_0713(PF13565)
324925.Ppha_2873PF08357
324925.Ppha_1524(PF14701)
324925.Ppha_1129(PF06250)
324925.Ppha_1503PF10046
324925.Ppha_2660PF03370
324925.Ppha_2209(PF04326)
324925.Ppha_1976(PF03781)
324925.Ppha_1977(PF13565)
324925.Ppha_1794(PF11965)
324925.Ppha_0744(PF06250)
324925.Ppha_2233(PF13304)
324925.Ppha_2237PF13271
324925.Ppha_1220(PF13676)
324925.Ppha_1226(PF06250)
324925.Ppha_1428(PF04326)
324925.Ppha_1135(PF13304)
324925.Ppha_1420PF13271
324925.Ppha_2039(PF06250)
324925.Ppha_0890PF13271
324925.Ppha_1234(PF03781)
324925.Ppha_1944(PF03781)
324925.Ppha_1124(PF04326)
324925.Ppha_2378(PF03781)
324925.Ppha_0889(PF04326)
324925.Ppha_1939(PF13676)
324925.Ppha_1448(PF04326)
324925.Ppha_2017(PF13565)
324925.Ppha_2014(PF13565)
324925.Ppha_2581(PF11965)
324925.Ppha_2583(PF11965)
324925.Ppha_0181(PF06250)
324925.Ppha_1455(PF04326)
324925.Ppha_1450(PF13676)
324925.Ppha_2008(PF13176)
324925.Ppha_0539(PF13565)
324925.Ppha_2917(PF13676)
324925.Ppha_0446(PF13176)
324925.Ppha_1462(PF02026)
324925.Ppha_1467(PF13565)
324925.Ppha_1712(PF13176)
324925.Ppha_2726(PF09366)
324925.Ppha_2613(PF13304)
324925.Ppha_2430(PF05729)
324925.Ppha_0273(PF13676)
324925.Ppha_1471(PF13676)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================