Metamenu

Effective results for Lactobacillus gasseri ATCC 33323 = JCM 1131 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
324831.LGAS_0179(PF03051)
324831.LGAS_1351(PF06100)
324831.LGAS_0181(PF03051)
324831.LGAS_0388(PF13151)
324831.LGAS_0604PF07453
324831.LGAS_0484(PF06100)
324831.LGAS_0730(PF03051)
324831.LGAS_1643(PF03577)
324831.LGAS_0058(PF01501)
324831.LGAS_0059(PF01501)
324831.LGAS_0783(PF03577)
324831.LGAS_0255(PF03577)
324831.LGAS_0666PF07453
324831.LGAS_0060(PF01501)
324831.LGAS_0334(PF03051)
324831.LGAS_1753(PF03577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================