Effective results for Anaplasma marginale str. Florida (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 41
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 5 proteins (1 high, 4 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
320483.AMF_792			+		ER; (ER)
320483.AMF_847			+		ER
320483.AMF_931			+		(mitochondrial)
320483.AMF_975			+		ER
320483.AMF_654			+		mitochondrial; (mitochondrial)
320483.AMF_080			+		ER
320483.AMF_837			+		ER
320483.AMF_108			+		(ER)
320483.AMF_640			+		ER
320483.AMF_026			+		(mitochondrial)
320483.AMF_728			+		(mitochondrial)
320483.AMF_593			+		(mitochondrial)
320483.AMF_264			+		(ER)
320483.AMF_744			+		plastid
320483.AMF_449				(PF01018)
320483.AMF_526			+
320483.AMF_926			+
320483.AMF_530			+
320483.AMF_218			+
320483.AMF_991				(PF00707)
320483.AMF_363			+
320483.AMF_962				(PF00707)
320483.AMF_842				PF02326
320483.AMF_020			+
320483.AMF_300			+
320483.AMF_281			+
320483.AMF_459			+
320483.AMF_269			+
320483.AMF_265			+
320483.AMF_941			+
320483.AMF_349			+
320483.AMF_343			+
320483.AMF_135			+
320483.AMF_642				(PF01018)
320483.AMF_630			+
320483.AMF_136			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================