Metamenu

Effective results for Bacillus pumilus SAFR-032 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 14 proteins (1 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
315750.BPUM_1677(PF09511)(mitochondrial)
315750.BPUM_1682(PF14040)ER
315750.BPUM_0312(PF14040)ER
315750.BPUM_3168PF09787ER
315750.BPUM_0680(PF03407)(plastid)
315750.BPUM_1183(PF14748)
315750.BPUM_0805(PF00190)
315750.BPUM_1824(PF14748)
315750.BPUM_2294(PF14748)
315750.BPUM_2109(PF14748)
315750.BPUM_0247(PF05225)
315750.BPUM_2904(PF00190)
315750.BPUM_3439(PF00190)
315750.BPUM_0678(PF03407)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================