Metamenu

Effective results for Bacillus cytotoxicus NVH 391-98 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 20 proteins (2 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
315749.Bcer98_3769(PF01773) (PF07662)ER
315749.Bcer98_3546(PF01773) (PF07662)ER
315749.Bcer98_0310(PF01773) (PF07662)ER
315749.Bcer98_3640(PF01773) (PF07662)ER
315749.Bcer98_3641(PF01773) (PF07662)ER
315749.Bcer98_0124(PF00344)mitochondrial
315749.Bcer98_2190(PF11070)ER
315749.Bcer98_3453(PF09962)ER
315749.Bcer98_1843(PF00344)mitochondrial
315749.Bcer98_2521(PF04127)ER
315749.Bcer98_1989(PF03630)
315749.Bcer98_2572(PF13921)
315749.Bcer98_0834PF10250
315749.Bcer98_2001(PF04127)
315749.Bcer98_3702(PF05225)
315749.Bcer98_1968PF15636
315749.Bcer98_2559(PF02873)
315749.Bcer98_3647(PF02873)
315749.Bcer98_3235(PF09962)
315749.Bcer98_3116(PF13921)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================