Effective results for Psychromonas sp. CNPT3 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 15 proteins (2 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314282.PCNPT3_09923(PF07819)ER
314282.PCNPT3_09089(PF05724)(mitochondrial)
314282.PCNPT3_09898(PF07819)ER; (ER)
314282.PCNPT3_02385(PF16889)(mitochondrial)
314282.PCNPT3_13478(PF16889)(ER)
314282.PCNPT3_09109(PF05724)
314282.PCNPT3_09873(PF07819)
314282.PCNPT3_12764PF01536
314282.PCNPT3_13820PF14529
314282.PCNPT3_03785(PF02317)
314282.PCNPT3_06683(PF03803)
314282.PCNPT3_10525(PF10354)
314282.PCNPT3_13731(PF16889)not used
314282.PCNPT3_09084(PF05724)not used
314282.PCNPT3_08635(PF02317)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================