Metamenu

Effective results for Marinomonas sp. MED121 (eggnog40)

Summary

Number of putative secreted proteins: 118
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 118 proteins (4 high, 114 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314277.MED121_17144(PF01419) (PF13330)ER
314277.MED121_05825(PF07386)ER
314277.MED121_15944(PF00497)ER
314277.MED121_09523(PF03924)ER
314277.MED121_13520(PF00497)ER
314277.MED121_14804(PF00497)ER
314277.MED121_20646(PF00497)ER
314277.MED121_03292(PF00497)ER
314277.MED121_14219(PF03924)ER
314277.MED121_03332(PF07386)ER
314277.MED121_13425(PF14240)(mitochondrial)
314277.MED121_11109(PF00497)ER
314277.MED121_23174(PF00497)ER; (ER)
314277.MED121_19274(PF00497)ER
314277.MED121_16914(PF00497)ER
314277.MED121_02540(PF02028)ER
314277.MED121_03307(PF01373)(ER)
314277.MED121_12370(PF00497)ER
314277.MED121_17614(PF00497)ER
314277.MED121_00120(PF00497)ER
314277.MED121_23544(PF00497)ER
314277.MED121_04788(PF00497)ER
314277.MED121_05780(PF04828)(mitochondrial); plastid
314277.MED121_11129(PF00497)mitochondrial
314277.MED121_05128(PF14240)mitochondrial
314277.MED121_12565(PF00497)ER
314277.MED121_17609(PF00497)ER
314277.MED121_20201(PF00497)ER
314277.MED121_00540(PF14240)(ER)
314277.MED121_20156(PF00497)ER
314277.MED121_02815(PF03924)(mitochondrial); mitochondrial
314277.MED121_03813(PF00497)(mitochondrial)
314277.MED121_01430(PF00497)ER
314277.MED121_02795(PF00497)ER
314277.MED121_02480(PF03318)(ER); ER
314277.MED121_16654(PF00497)ER
314277.MED121_05103(PF03924)(ER)
314277.MED121_16824(PF00497)ER
314277.MED121_23910(PF00497)ER
314277.MED121_18700(PF00497)ER
314277.MED121_07845(PF00497)ER
314277.MED121_23054(PF00497)ER
314277.MED121_08051(PF00497)ER
314277.MED121_06290(PF05686)(mitochondrial)
314277.MED121_17734(PF00497)mitochondrial
314277.MED121_17739(PF00497)ER
314277.MED121_02920(PF13409)(mitochondrial)
314277.MED121_05153(PF00497)ER
314277.MED121_15699(PF00497)ER
314277.MED121_12655(PF17186)ER
314277.MED121_17759(PF00497)mitochondrial
314277.MED121_17599(PF00497)(mitochondrial)
314277.MED121_02275PF08235(ER)
314277.MED121_20716(PF04828)(ER)
314277.MED121_17539(PF06155)(plastid)
314277.MED121_01550(PF00497)(mitochondrial)
314277.MED121_20946(PF00497)(mitochondrial)
314277.MED121_13210(PF04828)(mitochondrial)
314277.MED121_24159(PF02028)
314277.MED121_03277(PF00497)
314277.MED121_13915(PF02028)
314277.MED121_18635(PF07224)
314277.MED121_12795(PF00497)
314277.MED121_04808(PF17048)
314277.MED121_07385(PF00497)
314277.MED121_07160(PF02028)
314277.MED121_22257(PF11969)
314277.MED121_19027(PF04828)
314277.MED121_00710(PF13409)
314277.MED121_13090(PF04828)
314277.MED121_10819(PF00497)
314277.MED121_14789(PF00497)
314277.MED121_03878(PF04828)
314277.MED121_12685(PF17186)
314277.MED121_04928(PF02028)
314277.MED121_05673PF01536
314277.MED121_05183(PF00497)
314277.MED121_21445(PF02028)
314277.MED121_16844(PF00497)
314277.MED121_18850(PF02028)
314277.MED121_03928(PF01823)
314277.MED121_11079(PF14336)
314277.MED121_03828(PF04828)
314277.MED121_13985(PF03924)
314277.MED121_19721(PF06155)
314277.MED121_22914(PF02028)
314277.MED121_10220(PF00497)
314277.MED121_20856(PF13409)
314277.MED121_15294(PF03924)
314277.MED121_15929(PF00497)
314277.MED121_21325(PF04828)
314277.MED121_23940(PF04828)
314277.MED121_13145(PF00165)
314277.MED121_20446(PF02367)
314277.MED121_20441(PF02367)not used
314277.MED121_14799PF06268
314277.MED121_14469(PF04828)
314277.MED121_23935(PF00497)
314277.MED121_20236(PF00154)
314277.MED121_15389(PF02028)
314277.MED121_19936(PF00154)
314277.MED121_03195(PF14240)
314277.MED121_09218(PF06155)
314277.MED121_02975(PF00497)
314277.MED121_12835(PF13409)
314277.MED121_19941(PF00154)
314277.MED121_09228(PF02028)
314277.MED121_18565PF04927not used
314277.MED121_00850(PF03803)
314277.MED121_19379(PF06155)
314277.MED121_08181(PF02028)
314277.MED121_09900(PF00497)
314277.MED121_17124(PF04828)
314277.MED121_17134(PF00497)
314277.MED121_21340(PF07386)
314277.MED121_04768(PF00497)
314277.MED121_02705(PF04828)
314277.MED121_16979(PF04828)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.875 (15/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================