Effective results for Roseovarius sp. 217 (eggnog40)
Summary
Number of putative secreted proteins: 101
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 101 proteins (1 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 314264.ROS217_20562 | (PF16350) (PF01571) (PF08669) | ER | |||
| 314264.ROS217_14471 | (PF01571) (PF08669) | mitochondrial | |||
| 314264.ROS217_07025 | (PF16350) (PF01571) (PF08669) | (ER) | |||
| 314264.ROS217_23780 | (PF01571) (PF08669) | (mitochondrial) | |||
| 314264.ROS217_16740 | (PF03567) | (mitochondrial) | |||
| 314264.ROS217_13551 | (PF16350) (PF01571) (PF08669) | ||||
| 314264.ROS217_03435 | (PF02630) | (mitochondrial) | |||
| 314264.ROS217_08835 | PF13405 | ER | |||
| 314264.ROS217_06434 | (PF02630) | mitochondrial | |||
| 314264.ROS217_03745 | (PF10013) | (mitochondrial) | |||
| 314264.ROS217_01195 | (PF02630) | ER | |||
| 314264.ROS217_03005 | (PF02630) | (ER) | |||
| 314264.ROS217_00850 | (PF05990) | (mitochondrial); (plastid) | |||
| 314264.ROS217_10662 | (PF03567) | (ER) | |||
| 314264.ROS217_05754 | (PF00685) | (mitochondrial) | |||
| 314264.ROS217_02985 | (PF02630) | ER | |||
| 314264.ROS217_16110 | (PF08271) | (mitochondrial) | |||
| 314264.ROS217_03805 | (PF00685) | mitochondrial; (mitochondrial) | |||
| 314264.ROS217_03620 | (PF05990) | (mitochondrial); (plastid) | |||
| 314264.ROS217_10642 | (PF02630) | ER | |||
| 314264.ROS217_20557 | (PF16350) (PF01571) (PF08669) | ||||
| 314264.ROS217_10652 | (PF13704) | mitochondrial | |||
| 314264.ROS217_13536 | (PF16350) (PF01571) (PF08669) | ||||
| 314264.ROS217_22187 | (PF03209) | ER | |||
| 314264.ROS217_10922 | (PF13704) | mitochondrial; (mitochondrial) | |||
| 314264.ROS217_02205 | (PF16350) (PF01571) (PF08669) | ||||
| 314264.ROS217_16241 | (PF01571) (PF08669) | ||||
| 314264.ROS217_05944 | (PF01571) (PF08669) | ||||
| 314264.ROS217_22237 | (PF03209) | (ER) | |||
| 314264.ROS217_19022 | (PF01571) (PF08669) | ||||
| 314264.ROS217_15705 | (PF00549) (PF08442) | ||||
| 314264.ROS217_06444 | (PF02630) | (plastid) | |||
| 314264.ROS217_18947 | (PF01571) (PF08669) | ||||
| 314264.ROS217_03800 | (PF00685) | (mitochondrial) | |||
| 314264.ROS217_00050 | (PF13871) (PF13872) | ||||
| 314264.ROS217_02380 | (PF02630) | (ER) | |||
| 314264.ROS217_16316 | (PF01571) (PF08669) | ||||
| 314264.ROS217_10657 | (PF02485) | plastid | |||
| 314264.ROS217_15755 | (PF00549) | plastid | |||
| 314264.ROS217_06925 | (PF00549) (PF08442) | ||||
| 314264.ROS217_15760 | (PF00549) (PF08442) | ||||
| 314264.ROS217_15775 | (PF00549) (PF08442) | ||||
| 314264.ROS217_22967 | (PF01571) (PF08669) | ||||
| 314264.ROS217_17142 | (PF01571) (PF08669) | ||||
| 314264.ROS217_18987 | (PF01571) (PF08669) | ||||
| 314264.ROS217_01645 | (PF13871) (PF13872) | ||||
| 314264.ROS217_17582 | (PF12973) | (ER) | |||
| 314264.ROS217_20312 | (PF13936) | ||||
| 314264.ROS217_08574 | (PF03567) | ||||
| 314264.ROS217_01045 | (PF02195) | ||||
| 314264.ROS217_19967 | (PF02195) | ||||
| 314264.ROS217_02670 | (PF02195) | ||||
| 314264.ROS217_11576 | (PF13704) | ||||
| 314264.ROS217_11571 | (PF13704) | ||||
| 314264.ROS217_16730 | (PF13936) | ||||
| 314264.ROS217_01680 | (PF02195) | ||||
| 314264.ROS217_23227 | (PF02195) | ||||
| 314264.ROS217_02715 | (PF13871) | not used | |||
| 314264.ROS217_21212 | (PF13704) | ||||
| 314264.ROS217_19002 | (PF11927) | ||||
| 314264.ROS217_13146 | (PF12973) | ||||
| 314264.ROS217_13096 | (PF05990) | ||||
| 314264.ROS217_23950 | (PF02195) | ||||
| 314264.ROS217_21177 | (PF14532) | ||||
| 314264.ROS217_19812 | (PF02195) | ||||
| 314264.ROS217_09045 | (PF03092) | ||||
| 314264.ROS217_20162 | (PF00685) | ||||
| 314264.ROS217_23182 | (PF13936) | ||||
| 314264.ROS217_00935 | (PF01498) | ||||
| 314264.ROS217_01400 | (PF13936) | ||||
| 314264.ROS217_12356 | (PF09585) | ||||
| 314264.ROS217_12351 | (PF09585) | ||||
| 314264.ROS217_17527 | (PF04115) | ||||
| 314264.ROS217_12836 | (PF14532) | ||||
| 314264.ROS217_09727 | (PF02195) | ||||
| 314264.ROS217_20157 | (PF06258) | ||||
| 314264.ROS217_18072 | (PF11927) | ||||
| 314264.ROS217_10317 | (PF03567) | ||||
| 314264.ROS217_00895 | (PF12973) | ||||
| 314264.ROS217_14896 | (PF13936) | ||||
| 314264.ROS217_15970 | (PF04115) | ||||
| 314264.ROS217_15765 | (PF00549) | ||||
| 314264.ROS217_02710 | (PF13872) | ||||
| 314264.ROS217_03530 | (PF02195) | ||||
| 314264.ROS217_20137 | (PF06258) | ||||
| 314264.ROS217_20132 | (PF00685) | ||||
| 314264.ROS217_06930 | (PF00549) | ||||
| 314264.ROS217_04874 | (PF01786) | ||||
| 314264.ROS217_17030 | (PF05990) | ||||
| 314264.ROS217_20102 | (PF06258) | ||||
| 314264.ROS217_20457 | (PF14532) | ||||
| 314264.ROS217_00215 | (PF13455) | ||||
| 314264.ROS217_10322 | (PF02485) | ||||
| 314264.ROS217_01035 | (PF02195) | ||||
| 314264.ROS217_20062 | (PF12973) | ||||
| 314264.ROS217_01910 | (PF02195) | ||||
| 314264.ROS217_14336 | (PF09458) | ||||
| 314264.ROS217_07984 | (PF14532) | ||||
| 314264.ROS217_02445 | (PF13936) | ||||
| 314264.ROS217_09932 | (PF04115) | ||||
| 314264.ROS217_01900 | (PF02195) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.0 (8/8 KEGG proteins)
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