Effective results for Oceanicola granulosus HTCC2516 (eggnog40)

Summary

Number of putative secreted proteins: 65
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 65 proteins (2 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314256.OG2516_11126(PF07517) (PF01043)(mitochondrial)
314256.OG2516_11096PF10712(mitochondrial)
314256.OG2516_17855(PF11977)ER
314256.OG2516_11046(PF13704)(mitochondrial); mitochondrial
314256.OG2516_11641(PF08570)ER
314256.OG2516_01109(PF08570)ER
314256.OG2516_02803(PF08402)(mitochondrial)
314256.OG2516_18420(PF07517) (PF01043)
314256.OG2516_11041(PF02485)(plastid)
314256.OG2516_18615(PF08402)(mitochondrial)
314256.OG2516_17835(PF08402)(mitochondrial)
314256.OG2516_14476(PF07517) (PF01043)
314256.OG2516_08953(PF09458)
314256.OG2516_16836(PF02485)
314256.OG2516_00974(PF13704)
314256.OG2516_19080(PF11338)not used
314256.OG2516_05283(PF00614)
314256.OG2516_00414(PF01321)
314256.OG2516_12839(PF00614)
314256.OG2516_19075(PF00829)
314256.OG2516_04099(PF08402)
314256.OG2516_16259(PF08402)
314256.OG2516_03128(PF08402)
314256.OG2516_13696(PF08402)
314256.OG2516_12101(PF08402)
314256.OG2516_12614(PF08402)
314256.OG2516_15954(PF08402)
314256.OG2516_12774(PF01321)
314256.OG2516_17720(PF08402)
314256.OG2516_08122(PF13704)
314256.OG2516_18265(PF08402)
314256.OG2516_16469(PF08402)
314256.OG2516_04049(PF11338)
314256.OG2516_16269(PF01321)
314256.OG2516_07937(PF01321)
314256.OG2516_07243(PF08402)
314256.OG2516_07116(PF08402)
314256.OG2516_10446(PF08402)
314256.OG2516_06956(PF08402)
314256.OG2516_02439(PF08402)
314256.OG2516_06556(PF08402)
314256.OG2516_05143(PF01321)
314256.OG2516_18005(PF08402)
314256.OG2516_04004(PF00829)
314256.OG2516_18915PF00435
314256.OG2516_04164(PF08402)
314256.OG2516_10551(PF08402)
314256.OG2516_02574(PF01321)
314256.OG2516_12664(PF08402)
314256.OG2516_18750(PF08402)
314256.OG2516_14850(PF16952)
314256.OG2516_18685(PF08402)
314256.OG2516_15419(PF08402)
314256.OG2516_05553(PF16332)
314256.OG2516_00984(PF13704)
314256.OG2516_00989(PF13704)
314256.OG2516_16199(PF08402)
314256.OG2516_06591(PF08402)
314256.OG2516_13059(PF08402)
314256.OG2516_18305(PF08402)
314256.OG2516_08157(PF13704)
314256.OG2516_11561(PF01321)
314256.OG2516_00954(PF08402)
314256.OG2516_17655(PF01321)
314256.OG2516_05573(PF08402)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================