Effective results for Fulvimarina pelagi HTCC2506 (eggnog40)
Summary
Number of putative secreted proteins: 137
- Predicted by T4SEpre: 130
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 314231.FP2506_04280 | (PF07731) | mitochondrial | |||
| 314231.FP2506_06991 | + | ER | |||
| 314231.FP2506_00820 | (PF07885) | ER | |||
| 314231.FP2506_09391 | + | (ER) | |||
| 314231.FP2506_02864 | + | ER | |||
| 314231.FP2506_11862 | + | ER | |||
| 314231.FP2506_08661 | + | ER | |||
| 314231.FP2506_08331 | + | ER | |||
| 314231.FP2506_07526 | + | (mitochondrial) | |||
| 314231.FP2506_04951 | + | ER | |||
| 314231.FP2506_04311 | (PF07731) | (ER) | |||
| 314231.FP2506_06211 | + | mitochondrial; (mitochondrial) | |||
| 314231.FP2506_02699 | + | ER | |||
| 314231.FP2506_17649 | + | ER | |||
| 314231.FP2506_18039 | + | mitochondrial | |||
| 314231.FP2506_16744 | (PF00909) | ER | |||
| 314231.FP2506_16834 | + | ER | |||
| 314231.FP2506_13329 | + | ER | |||
| 314231.FP2506_12669 | + | ER | |||
| 314231.FP2506_12539 | + | mitochondrial; (mitochondrial) | |||
| 314231.FP2506_00090 | (PF07885) | ER | |||
| 314231.FP2506_02709 | + | ER | |||
| 314231.FP2506_03149 | (PF00909) | ER | |||
| 314231.FP2506_14069 | + | ER | |||
| 314231.FP2506_13304 | + | ER | |||
| 314231.FP2506_00955 | + | ER | |||
| 314231.FP2506_03605 | (PF07885) | ER | |||
| 314231.FP2506_11127 | + | ER | |||
| 314231.FP2506_11757 | + | ER; (ER) | |||
| 314231.FP2506_00080 | + | (PF07731) | (ER) | ||
| 314231.FP2506_12639 | + | (mitochondrial); plastid | |||
| 314231.FP2506_00020 | (PF07731) | ER | |||
| 314231.FP2506_17214 | (PF02586) | (mitochondrial) | |||
| 314231.FP2506_13359 | + | ER | |||
| 314231.FP2506_18199 | + | ER | |||
| 314231.FP2506_06541 | (PF07885) | (ER) | |||
| 314231.FP2506_04876 | + | (plastid) | |||
| 314231.FP2506_09826 | + | (plastid) | |||
| 314231.FP2506_15134 | + | plastid | |||
| 314231.FP2506_03144 | (PF00909) | (ER) | |||
| 314231.FP2506_13949 | + | (mitochondrial) | |||
| 314231.FP2506_01735 | + | (ER) | |||
| 314231.FP2506_14969 | + | (ER) | |||
| 314231.FP2506_11847 | (PF03209) | (ER) | |||
| 314231.FP2506_12379 | + | (mitochondrial) | |||
| 314231.FP2506_05711 | + | ||||
| 314231.FP2506_00560 | (PF07731) | not used | |||
| 314231.FP2506_10626 | + | ||||
| 314231.FP2506_07001 | + | ||||
| 314231.FP2506_17534 | (PF02586) | ||||
| 314231.FP2506_07821 | + | ||||
| 314231.FP2506_01798 | + | ||||
| 314231.FP2506_15484 | + | ||||
| 314231.FP2506_15629 | + | ||||
| 314231.FP2506_11877 | + | ||||
| 314231.FP2506_08281 | + | ||||
| 314231.FP2506_06501 | + | ||||
| 314231.FP2506_15039 | + | ||||
| 314231.FP2506_10861 | + | ||||
| 314231.FP2506_02829 | + | ||||
| 314231.FP2506_17179 | + | ||||
| 314231.FP2506_06976 | + | ||||
| 314231.FP2506_05321 | + | ||||
| 314231.FP2506_10126 | + | ||||
| 314231.FP2506_18704 | + | ||||
| 314231.FP2506_15544 | + | ||||
| 314231.FP2506_15549 | + | ||||
| 314231.FP2506_05201 | + | ||||
| 314231.FP2506_04856 | (PF02586) | ||||
| 314231.FP2506_18559 | + | ||||
| 314231.FP2506_03524 | (PF01442) | ||||
| 314231.FP2506_02300 | + | ||||
| 314231.FP2506_12389 | + | ||||
| 314231.FP2506_06956 | + | ||||
| 314231.FP2506_06221 | + | ||||
| 314231.FP2506_17024 | + | ||||
| 314231.FP2506_15289 | + | ||||
| 314231.FP2506_03665 | + | ||||
| 314231.FP2506_04491 | (PF11911) | ||||
| 314231.FP2506_11637 | + | ||||
| 314231.FP2506_05091 | + | ||||
| 314231.FP2506_02759 | + | ||||
| 314231.FP2506_16184 | (PF03098) | ||||
| 314231.FP2506_16189 | (PF03098) | ||||
| 314231.FP2506_17109 | + | ||||
| 314231.FP2506_18874 | + | ||||
| 314231.FP2506_14854 | (PF01847) | not used | |||
| 314231.FP2506_15459 | (PF07885) | ||||
| 314231.FP2506_17639 | + | ||||
| 314231.FP2506_08121 | + | ||||
| 314231.FP2506_08781 | + | ||||
| 314231.FP2506_16179 | (PF03098) | ||||
| 314231.FP2506_16194 | (PF03098) | ||||
| 314231.FP2506_12874 | (PF11911) | ||||
| 314231.FP2506_06446 | + | ||||
| 314231.FP2506_00195 | (PF07731) | ||||
| 314231.FP2506_01863 | + | ||||
| 314231.FP2506_18259 | + | ||||
| 314231.FP2506_16694 | (PF00909) | ||||
| 314231.FP2506_12084 | + | ||||
| 314231.FP2506_06326 | + | ||||
| 314231.FP2506_12464 | + | ||||
| 314231.FP2506_14479 | (PF02586) | ||||
| 314231.FP2506_15479 | + | ||||
| 314231.FP2506_02585 | + | ||||
| 314231.FP2506_03565 | + | not used | |||
| 314231.FP2506_11797 | (PF03209) | ||||
| 314231.FP2506_12854 | + | ||||
| 314231.FP2506_07536 | (PF02586) | ||||
| 314231.FP2506_01065 | + | ||||
| 314231.FP2506_04476 | + | ||||
| 314231.FP2506_02375 | + | ||||
| 314231.FP2506_06676 | (PF07885) | ||||
| 314231.FP2506_11107 | + | ||||
| 314231.FP2506_07041 | + | ||||
| 314231.FP2506_06646 | PF06888 | ||||
| 314231.FP2506_16809 | + | ||||
| 314231.FP2506_09861 | + | ||||
| 314231.FP2506_15424 | + | ||||
| 314231.FP2506_04741 | + | ||||
| 314231.FP2506_00170 | (PF07731) | ||||
| 314231.FP2506_03775 | + | ||||
| 314231.FP2506_17309 | + | ||||
| 314231.FP2506_16274 | (PF10013) | ||||
| 314231.FP2506_01380 | + | ||||
| 314231.FP2506_13824 | + | ||||
| 314231.FP2506_16649 | (PF00909) | ||||
| 314231.FP2506_18154 | + | ||||
| 314231.FP2506_01150 | + | ||||
| 314231.FP2506_15774 | + | ||||
| 314231.FP2506_04656 | + | ||||
| 314231.FP2506_02664 | + | ||||
| 314231.FP2506_02190 | + | ||||
| 314231.FP2506_10566 | + | ||||
| 314231.FP2506_07231 | + | ||||
| 314231.FP2506_07261 | + | ||||
| 314231.FP2506_14184 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.5 (5/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (5/10 KEGG proteins)
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