Effective results for Dokdonia sp. MED134 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 43 proteins (5 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
313590.MED134_08871				(PF02128) (PF00629)	ER
313590.MED134_10675				(PF16889)	ER
313590.MED134_05329				(PF06452)	ER
313590.MED134_00680				(PF04784)	ER
313590.MED134_03809				(PF16313)	ER
313590.MED134_05964				(PF16889)	(mitochondrial)
313590.MED134_13166				(PF00965)	ER
313590.MED134_11796				(PF16313)	ER
313590.MED134_02880				(PF10988)	ER
313590.MED134_05019				(PF10988)	mitochondrial
313590.MED134_00715				(PF10988)	ER
313590.MED134_09231				(PF10988)	ER
313590.MED134_02875				(PF10988)	ER
313590.MED134_10166				(PF02128)	ER
313590.MED134_11205				(PF02128)	ER
313590.MED134_10710				(PF14240)	ER
313590.MED134_09351				(PF03321)	mitochondrial; (mitochondrial)
313590.MED134_00735				(PF04784)	ER
313590.MED134_04514				(PF15902)	ER
313590.MED134_04994				(PF15902)	ER
313590.MED134_07344				(PF06452)	ER
313590.MED134_02610				(PF00629)	ER
313590.MED134_14592				(PF06452)	ER
313590.MED134_05234				(PF06452)	ER
313590.MED134_08756				(PF15902)	ER
313590.MED134_02595				(PF00629)	ER
313590.MED134_14451				(PF16313)	ER
313590.MED134_00740				(PF04784)	ER
313590.MED134_10725				(PF14240)	ER
313590.MED134_10730				PF00036	ER
313590.MED134_00545				(PF06452)	ER
313590.MED134_02005				(PF10988)	ER
313590.MED134_07526				(PF03321)	(plastid)
313590.MED134_09881				(PF10013)	not used
313590.MED134_03544				(PF01823)
313590.MED134_01305				(PF03321)
313590.MED134_08016				PF08695
313590.MED134_06454				(PF07766)
313590.MED134_10221				(PF10504)
313590.MED134_05544				PF00036
313590.MED134_13651				(PF03016)
313590.MED134_11436				PF07492
313590.MED134_02495				PF08695

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================