Metamenu

Effective results for Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
312153.Pnuc_0643(PF02275)ER
312153.Pnuc_1652(PF13664)ER
312153.Pnuc_1004(PF04982)ER
312153.Pnuc_0992(PF02275)ER
312153.Pnuc_0547(PF05023)ER
312153.Pnuc_1607(PF10013)(mitochondrial); not used
312153.Pnuc_1016(PF13664)(ER)
312153.Pnuc_1006(PF04982)(ER)
312153.Pnuc_0575(PF02275)(plastid)
312153.Pnuc_1576(PF02275)(mitochondrial)
312153.Pnuc_0650(PF01007)
312153.Pnuc_1164(PF02689)
312153.Pnuc_1005(PF04982)
312153.Pnuc_1649(PF13664)
312153.Pnuc_0299(PF04982)
312153.Pnuc_2059(PF01007)
312153.Pnuc_1826PF16994
312153.Pnuc_1527(PF10504)
312153.Pnuc_0697(PF02275)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================