Metamenu

Effective results for Agrobacterium vitis S4 (eggnog40)

Summary

Number of putative secreted proteins: 103
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 25 proteins (1 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
311402.Avi_1159+mitochondrial
311402.Avi_0749+mitochondrial; plastid
311402.Avi_4314+ER
311402.Avi_2153+ER
311402.Avi_0224+ER
311402.Avi_6136+ER
311402.Avi_1138+(mitochondrial)
311402.Avi_2541+(mitochondrial)
311402.Avi_2001(PF00182)mitochondrial
311402.Avi_2174(PF16387)mitochondrial; (mitochondrial)
311402.Avi_0934+ER
311402.Avi_5460+ER
311402.Avi_6204(PF00182)(mitochondrial)
311402.Avi_4214+ER
311402.Avi_2372+(mitochondrial)
311402.Avi_1086(PF13844)(mitochondrial); (plastid)
311402.Avi_0915+ER
311402.Avi_3564PF01644(mitochondrial)
311402.Avi_0904+ER
311402.Avi_1295+ER
311402.Avi_0819+ER; (ER)
311402.Avi_1727(PF06455)ER
311402.Avi_3935+(ER)
311402.Avi_4148+ER
311402.Avi_0241+ER
311402.Avi_0335+ER
311402.Avi_2298+mitochondrial; (mitochondrial)
311402.Avi_3881+ER
311402.Avi_3461+ER
311402.Avi_3710+(ER)
311402.Avi_0190+(ER)
311402.Avi_1161+(PF13844)
311402.Avi_3855+(ER)
311402.Avi_0522+(ER)
311402.Avi_6273+(mitochondrial)
311402.Avi_2161+(mitochondrial)
311402.Avi_4358+(ER)
311402.Avi_4347+(mitochondrial)
311402.Avi_3801+(ER)
311402.Avi_5817+(plastid)
311402.Avi_1291+(plastid)
311402.Avi_5949+(mitochondrial)
311402.Avi_2277+(ER)
311402.Avi_0507+
311402.Avi_1755+
311402.Avi_2433+
311402.Avi_3041+
311402.Avi_1162(PF13844)
311402.Avi_1160(PF13844)
311402.Avi_3048+
311402.Avi_0880+
311402.Avi_1215+
311402.Avi_1217+
311402.Avi_3218+
311402.Avi_3210+
311402.Avi_1964(PF02357)
311402.Avi_5668+
311402.Avi_0156+
311402.Avi_6062+
311402.Avi_1794+
311402.Avi_6019+
311402.Avi_1150+
311402.Avi_3947+
311402.Avi_4222(PF13844)
311402.Avi_6068+
311402.Avi_5465+
311402.Avi_2764(PF02357)
311402.Avi_2761(PF00847)
311402.Avi_4350+
311402.Avi_2579(PF13844)
311402.Avi_2198+
311402.Avi_1088(PF13844)
311402.Avi_4107+
311402.Avi_0122+
311402.Avi_1332(PF00182)
311402.Avi_4176+
311402.Avi_5800+
311402.Avi_3129+
311402.Avi_3120(PF08975)
311402.Avi_2239(PF01442)
311402.Avi_3631+
311402.Avi_0001+
311402.Avi_3627+
311402.Avi_6094+
311402.Avi_5958+
311402.Avi_5560+
311402.Avi_0808+
311402.Avi_2758+
311402.Avi_2410(PF13844)
311402.Avi_2411(PF13844)
311402.Avi_3478+
311402.Avi_4147(PF09731)
311402.Avi_1487+
311402.Avi_3420(PF02357)
311402.Avi_3431+
311402.Avi_0516+
311402.Avi_1866+
311402.Avi_5025+
311402.Avi_2099+
311402.Avi_3410(PF01234)
311402.Avi_3091(PF13844)
311402.Avi_1818(PF02357)
311402.Avi_1104+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================