Metamenu

Effective results for Thermotoga neapolitana DSM 4359 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
309803.CTN_1284(PF01693)(mitochondrial)
309803.CTN_1631(PF10142)ER
309803.CTN_1107(PF01670)ER
309803.CTN_1072(PF01257)(mitochondrial)
309803.CTN_0656(PF03266)(mitochondrial)
309803.CTN_0014(PF03415)ER
309803.CTN_1106(PF01670)(mitochondrial)
309803.CTN_1732(PF07837) (PF02971)
309803.CTN_0459(PF01257)
309803.CTN_1233(PF01927)
309803.CTN_0049PF10174
309803.CTN_1172(PF01693)
309803.CTN_0516(PF09419)
309803.CTN_0155(PF03415)
309803.CTN_0686(PF01257)
309803.CTN_0688(PF01257)
309803.CTN_1800(PF01927)
309803.CTN_1067(PF01257)
309803.CTN_1069(PF01257)
309803.CTN_1068(PF01257)
309803.CTN_0919(PF01991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================