Effective results for Rickettsia akari str. Hartford (eggnog40)
Summary
Number of putative secreted proteins: 46
- Predicted by T4SEpre: 46
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 12 proteins (7 high, 5 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
293614.A1C_05810 | PF03219 | ER | |||
293614.A1C_00790 | + | ER | |||
293614.A1C_01940 | + | ER | |||
293614.A1C_00800 | + | ER | |||
293614.A1C_02495 | + | ER | |||
293614.A1C_02490 | + | (mitochondrial) | |||
293614.A1C_06095 | + | ER | |||
293614.A1C_06695 | + | ER | |||
293614.A1C_02280 | (PF05637) | ER | |||
293614.A1C_06475 | (PF03959) | ER | |||
293614.A1C_06010 | + | ER | |||
293614.A1C_03065 | + | ER | |||
293614.A1C_00360 | + | ER | |||
293614.A1C_00260 | PF02326 | (ER) | |||
293614.A1C_00420 | + | ER | |||
293614.A1C_00810 | + | ER | |||
293614.A1C_03730 | + | ||||
293614.A1C_04030 | + | ||||
293614.A1C_05815 | (PF09752) | ||||
293614.A1C_03560 | + | ||||
293614.A1C_02830 | PF03219 | ||||
293614.A1C_02330 | + | ||||
293614.A1C_00440 | PF03219 | ||||
293614.A1C_01580 | + | ||||
293614.A1C_01885 | + | ||||
293614.A1C_06320 | + | ||||
293614.A1C_05960 | + | ||||
293614.A1C_03575 | PF03219 | ||||
293614.A1C_00305 | + | ||||
293614.A1C_03990 | + | ||||
293614.A1C_03650 | (PF09825) | ||||
293614.A1C_04650 | + | ||||
293614.A1C_05870 | + | ||||
293614.A1C_06750 | + | ||||
293614.A1C_02715 | + | ||||
293614.A1C_00185 | + | ||||
293614.A1C_01080 | + | ||||
293614.A1C_03840 | PF03219 | ||||
293614.A1C_03190 | + | ||||
293614.A1C_01330 | + | ||||
293614.A1C_01565 | + | ||||
293614.A1C_02855 | + | ||||
293614.A1C_02585 | (PF14328) | ||||
293614.A1C_01675 | + | ||||
293614.A1C_01775 | + | ||||
293614.A1C_02770 | PF01369 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.6 (16/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.6 (16/10 KEGG proteins)