Effective results for Wolbachia endosymbiont strain TRS of Brugia malayi (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 45
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (0 high, 1 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
292805.Wbm0748			+		(mitochondrial)
292805.Wbm0623				(PF06455)	ER
292805.Wbm0315			+		ER; (ER)
292805.Wbm0457			+		ER
292805.Wbm0769			+		ER
292805.Wbm0268			+		ER
292805.Wbm0502			+		(mitochondrial)
292805.Wbm0341			+		mitochondrial; ER
292805.Wbm0077			+		(mitochondrial)
292805.Wbm0591			+		ER
292805.Wbm0283			+		(ER); ER
292805.Wbm0542			+		ER
292805.Wbm0113			+		(mitochondrial)
292805.Wbm0207			+		(ER)
292805.Wbm0215			+
292805.Wbm0405			+
292805.Wbm0773			+
292805.Wbm0174			+
292805.Wbm0409			+
292805.Wbm0587			+
292805.Wbm0222			+
292805.Wbm0638			+
292805.Wbm0068			+
292805.Wbm0463			+
292805.Wbm0305			+
292805.Wbm0110			+
292805.Wbm0726			+
292805.Wbm0484			+
292805.Wbm0576			+
292805.Wbm0199			+
292805.Wbm0538			+
292805.Wbm0080			+
292805.Wbm0429			+
292805.Wbm0144			+
292805.Wbm0447			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.2 (12/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================