Metamenu

Effective results for Gluconobacter oxydans 621H (eggnog40)

Summary

Number of putative secreted proteins: 83
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 83 proteins (0 high, 83 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
290633.GOX1492(PF13276) (PF00665)(mitochondrial)
290633.GOX1721(PF13276) (PF00665)(mitochondrial)
290633.GOX2195(PF13276) (PF00665)(mitochondrial)
290633.GOX1930(PF13276) (PF00665)(mitochondrial)
290633.GOX1325(PF13276) (PF00665)(mitochondrial)
290633.GOX1343(PF13276) (PF00665)(mitochondrial)
290633.GOX1376(PF13276) (PF00665)(mitochondrial)
290633.GOX2480(PF13276) (PF00665)(mitochondrial)
290633.GOX1765(PF04632)ER
290633.GOX1384(PF00665)mitochondrial; (mitochondrial)
290633.GOX1441(PF01011)ER
290633.GOX1456(PF04577)mitochondrial
290633.GOX1030(PF01609)mitochondrial; (mitochondrial)
290633.GOX1857(PF01011)ER
290633.GOX0730(PF04632)(ER); plastid
290633.GOX0822(PF13704)ER; (ER)
290633.GOX1068(PF01011)mitochondrial
290633.GOX0265(PF01011)ER
290633.GOX1565(PF01609)mitochondrial; (mitochondrial)
290633.GOX2115(PF04632)(mitochondrial)
290633.GOX0516(PF01011)ER
290633.GOX0996(PF05598) (PF01609)
290633.GOX1491(PF00665)(mitochondrial)
290633.GOX1382(PF00665)(mitochondrial)
290633.GOX1389(PF05598) (PF01609)
290633.GOX1622(PF13276) (PF00665)
290633.GOX2148(PF00665)(mitochondrial)
290633.GOX0491(PF05598) (PF01609)
290633.GOX2165(PF05598) (PF01609)
290633.GOX1638(PF00665)(mitochondrial)
290633.GOX1476(PF05598) (PF01609)
290633.GOX1057(PF00665)(mitochondrial)
290633.GOX2375(PF00665)(mitochondrial)
290633.GOX0664(PF13276) (PF00665)
290633.GOX1403(PF05598) (PF01609)
290633.GOX0910(PF00665)(mitochondrial)
290633.GOX2189(PF00665)(mitochondrial)
290633.GOX1892(PF05598) (PF01609)
290633.GOX2191(PF00665)(mitochondrial)
290633.GOX2198(PF00665)(mitochondrial)
290633.GOX0686(PF00665)(mitochondrial)
290633.GOX0684(PF04632)(plastid)
290633.GOX0205(PF00665)(mitochondrial)
290633.GOX1330(PF00665)(mitochondrial)
290633.GOX2210(PF05598) (PF01609)
290633.GOX1324(PF05598) (PF01609)
290633.GOX0899(PF00665)(mitochondrial)
290633.GOX0893(PF00665)(mitochondrial)
290633.GOX2204(PF00665)(mitochondrial)
290633.GOX2201(PF05598) (PF01609)
290633.GOX1929(PF00665)(mitochondrial)
290633.GOX0419(PF05598) (PF01609)
290633.GOX2224(PF00665)(mitochondrial)
290633.GOX1590(PF00665)(mitochondrial)
290633.GOX0773(PF01609)
290633.GOX1762(PF12513)
290633.GOX0578(PF01609)
290633.GOX0558(PF01609)
290633.GOX1280(PF13704)
290633.GOX0028(PF13704)
290633.GOX2099(PF01609)
290633.GOX2161(PF00665)
290633.GOX1502(PF01609)
290633.GOX2426(PF01609)
290633.GOX2179(PF01609)
290633.GOX2081(PF04632)
290633.GOX0137(PF04632)
290633.GOX1270(PF01609)
290633.GOX1890(PF04577)
290633.GOX2199(PF06100)
290633.GOX0647(PF04632)
290633.GOX2200(PF06100)
290633.GOX0633(PF04577)
290633.GOX0634(PF04577)
290633.GOX1128(PF13704)
290633.GOX1238(PF07930)
290633.GOX0242(PF13704)
290633.GOX0755(PF04632)
290633.GOX1576(PF01609)
290633.GOX1566(PF01609)
290633.GOX0968(PF01609)
290633.GOX0966(PF13704)
290633.GOX0967(PF13704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================