Effective results for Citrobacter koseri ATCC BAA-895 (eggnog40)

Summary

Number of putative secreted proteins: 708
- Predicted by EffectiveT3: 168 (high confidence), 279 (low confidence)
- Predicted by EffectiveCCBD: 36 within, 31 before, 44 behind expected region 25..70aa
- Predicted by T4SEpre: 101
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 92 proteins (1 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
290338.CKO_00285		(<)		(PF05231)	ER
290338.CKO_01219		(<)		(PF00577)	ER
290338.CKO_00633				(PF03313) (PF03315)	(mitochondrial)
290338.CKO_03741		(>)			ER
290338.CKO_02110	+				(mitochondrial)
290338.CKO_00996	+				(ER)
290338.CKO_01066			+		ER
290338.CKO_03998			+		ER
290338.CKO_00608	(+)			(PF08125) (PF01232)	(mitochondrial)
290338.CKO_00603			+		ER
290338.CKO_03732			+		mitochondrial
290338.CKO_03957			+		ER
290338.CKO_04436	+				(ER); (plastid)
290338.CKO_04512				(PF03313) (PF03315)	(plastid)
290338.CKO_01104				(PF00950)	ER
290338.CKO_01075				(PF00345)	ER
290338.CKO_04596			+		ER
290338.CKO_00675				(PF00345)	ER
290338.CKO_00677				(PF00577)	ER
290338.CKO_01494			+		(mitochondrial)
290338.CKO_02917				(PF00345)	ER
290338.CKO_02705		(>)			ER
290338.CKO_03080				(PF00939)	ER
290338.CKO_02626				(PF00345)	ER
290338.CKO_03660			+		ER
290338.CKO_04363				(PF00577)	ER
290338.CKO_03716			+		ER
290338.CKO_02480		+			mitochondrial
290338.CKO_03434		(>)			(mitochondrial)
290338.CKO_04387		(<)			(ER)
290338.CKO_04383		(>)			ER
290338.CKO_00712				(PF05231)	ER
290338.CKO_03327		(<)			ER
290338.CKO_01779		(<)			ER
290338.CKO_04374		(>)			(mitochondrial)
290338.CKO_00019		(>)			ER
290338.CKO_05027			+		ER
290338.CKO_03113				(PF00577)	ER
290338.CKO_03114				(PF00345)	ER
290338.CKO_00007				(PF05231)	ER
290338.CKO_03849				(PF00939)	ER
290338.CKO_03276		(<)			(mitochondrial)
290338.CKO_02897			+		ER
290338.CKO_02895				(PF09811)	mitochondrial
290338.CKO_04154				(PF03313) (PF03315)	(plastid)
290338.CKO_04371				(PF00345)	ER
290338.CKO_04372				(PF00577)	(mitochondrial)
290338.CKO_04576			+		ER
290338.CKO_01762			+		ER; (ER)
290338.CKO_01613			+		ER
290338.CKO_01347		(<)			ER
290338.CKO_02400			+		ER
290338.CKO_04558				(PF03222)	(ER); plastid
290338.CKO_04237				(PF00577)	ER
290338.CKO_00938				(PF00950)	(ER)
290338.CKO_00937				(PF00950)	ER; (ER)
290338.CKO_04053				(PF00950)	ER
290338.CKO_05055				(PF08125) (PF01232)	(mitochondrial)
290338.CKO_05059	+				(ER)
290338.CKO_03820		(>)			mitochondrial
290338.CKO_01572				(PF08125) (PF01232)	(mitochondrial)
290338.CKO_02738			+		(mitochondrial)
290338.CKO_00653		(>)			mitochondrial
290338.CKO_04225				(PF03222)	(ER)
290338.CKO_03232				(PF00345)	mitochondrial; (mitochondrial)
290338.CKO_02044			+		ER
290338.CKO_02463		(>)			ER
290338.CKO_04453				(PF00939)	ER
290338.CKO_02686			+		ER
290338.CKO_03598		(<)			ER
290338.CKO_01883			+		(ER); ER
290338.CKO_01082		(<)			(mitochondrial); mitochondrial
290338.CKO_01174		+			ER
290338.CKO_03254			+		ER
290338.CKO_02324				(PF00345)	ER
290338.CKO_02144			+		(mitochondrial)
290338.CKO_04115	+				mitochondrial; (mitochondrial)
290338.CKO_00962				(PF00345)	ER
290338.CKO_00366		+			ER
290338.CKO_01163		(<)			ER
290338.CKO_01166				(PF03313) (PF03315)	(mitochondrial)
290338.CKO_00780				(PF10662)	mitochondrial; (mitochondrial)
290338.CKO_04236				(PF00345)	ER
290338.CKO_00546		(>)			mitochondrial
290338.CKO_04872		(>)			ER
290338.CKO_02208		+			(ER); ER
290338.CKO_03794		(>)			ER
290338.CKO_04092				(PF00950)	(ER)
290338.CKO_04093				(PF00950)	ER
290338.CKO_01845		(>)			ER
290338.CKO_01442		(>)			ER
290338.CKO_02547				(PF00939)	ER
290338.CKO_02682			+		mitochondrial; (mitochondrial)
290338.CKO_04640		(>)			ER
290338.CKO_03166	+				mitochondrial
290338.CKO_05139		+			ER
290338.CKO_01272		+			(ER)
290338.CKO_01218				(PF00345)	ER
290338.CKO_01212		(<)			(mitochondrial)
290338.CKO_01217		(<)			ER
290338.CKO_02801		(>)			ER
290338.CKO_03372				PF10712	ER
290338.CKO_03680		+			(mitochondrial)
290338.CKO_00950				(PF00950)	(ER)
290338.CKO_05123				(PF00345)	ER
290338.CKO_05120				(PF00345)	ER
290338.CKO_01144		(>)			ER
290338.CKO_01683			+		ER
290338.CKO_02651			+		ER
290338.CKO_01265	+				(mitochondrial)
290338.CKO_03406			+		ER
290338.CKO_02817				(PF05231)	ER
290338.CKO_02364				(PF00939)	ER
290338.CKO_04203		(<)			(ER)
290338.CKO_00180			+		ER
290338.CKO_04364				(PF00345)	ER
290338.CKO_04983	+				ER; (ER)
290338.CKO_01695	(+)				(ER)
290338.CKO_02603	(+)				(ER)
290338.CKO_02600	(+)	+			(plastid)
290338.CKO_00334				(PF10662)	(mitochondrial)
290338.CKO_00424		(<)			mitochondrial; not used
290338.CKO_05018		(<)
290338.CKO_03451		+
290338.CKO_03733				(PF08125) (PF01232)
290338.CKO_04356	+				(plastid)
290338.CKO_04773	+	(>)
290338.CKO_00071		(<)	+
290338.CKO_01541				(PF08125) (PF01232)
290338.CKO_02356	+	+
290338.CKO_03491	(+)				ER
290338.CKO_04369			+		(ER)
290338.CKO_00845	(+)				mitochondrial; (mitochondrial)
290338.CKO_00440		+			(mitochondrial); not used
290338.CKO_04014			+		(mitochondrial)
290338.CKO_01005	+				(plastid)
290338.CKO_01399	+	(>)
290338.CKO_00689	(+)				(mitochondrial)
290338.CKO_01623				(PF05683) (PF05681)
290338.CKO_05092	+				mitochondrial; not used
290338.CKO_02928	(+)				(ER); ER
290338.CKO_04525		+			(ER); not used
290338.CKO_00278	+				(mitochondrial)
290338.CKO_00470	+				(mitochondrial)
290338.CKO_01015	+				(plastid)
290338.CKO_00380	+				(mitochondrial)
290338.CKO_01120	+				(plastid)
290338.CKO_00568	+	+
290338.CKO_02424				(PF05683) (PF05681)
290338.CKO_01482	(+)				mitochondrial
290338.CKO_00002	(+)				mitochondrial; (mitochondrial)
290338.CKO_01131		(<)			ER; not used
290338.CKO_04930	+				plastid
290338.CKO_02419				(PF05034) (PF07476)
290338.CKO_02892	(+)				(mitochondrial)
290338.CKO_01686	+				mitochondrial; not used
290338.CKO_01687	+				(mitochondrial); not used
290338.CKO_03959		(>)
290338.CKO_04227	(+)				ER
290338.CKO_00744	+				(mitochondrial); not used
290338.CKO_02880	+	+
290338.CKO_03043				(PF01228)	(mitochondrial)
290338.CKO_01998	+				plastid
290338.CKO_01977	+				(mitochondrial)
290338.CKO_04709a			+		(mitochondrial)
290338.CKO_04428	+				(mitochondrial); not used
290338.CKO_01402	(+)				(ER)
290338.CKO_04429	(+)				mitochondrial; (mitochondrial)
290338.CKO_02271	(+)				(mitochondrial)
290338.CKO_02871	+				(plastid)
290338.CKO_04138	(+)				(mitochondrial)
290338.CKO_00837	(+)				mitochondrial; (mitochondrial)
290338.CKO_00692	(+)			(PF08125) (PF01232)
290338.CKO_04516	+			(PF03222)
290338.CKO_00850	(+)				(mitochondrial)
290338.CKO_01566	+				(ER); not used
290338.CKO_01419	(+)				mitochondrial
290338.CKO_02197	(+)				(mitochondrial)
290338.CKO_04451	+			(PF05681)
290338.CKO_03025	(+)				ER
290338.CKO_00226	+				(mitochondrial)
290338.CKO_00355	+				plastid
290338.CKO_01170	+				(mitochondrial); not used
290338.CKO_01887			+		plastid
290338.CKO_01422	+				(mitochondrial); not used
290338.CKO_02850				(PF03222)	(mitochondrial)
290338.CKO_02158	(+)				(mitochondrial); plastid
290338.CKO_01756	(+)				(mitochondrial)
290338.CKO_02234			+		(ER)
290338.CKO_01692	(+)				ER; (ER)
290338.CKO_00417				(PF05524)	(mitochondrial)
290338.CKO_01210		(>)		(PF05524)
290338.CKO_02307	(+)				ER
290338.CKO_00302			+		(mitochondrial)
290338.CKO_03146			+		(mitochondrial)
290338.CKO_00952	+		+
290338.CKO_03961		(>)	+
290338.CKO_00401				(PF05231)	(ER)
290338.CKO_02024	(+)				ER; (plastid)
290338.CKO_01040				(PF03222)	(ER)
290338.CKO_01667	(+)				(mitochondrial); (plastid)
290338.CKO_03749				(PF05683) (PF05681)
290338.CKO_05111	+				(plastid)
290338.CKO_02037		(<)			ER; not used
290338.CKO_01672	+				(mitochondrial)
290338.CKO_02375	+				(plastid)
290338.CKO_02973	+
290338.CKO_02119			+
290338.CKO_02577	+
290338.CKO_03511			+
290338.CKO_00635	+
290338.CKO_02598	+
290338.CKO_00198	+
290338.CKO_04401		(>)
290338.CKO_01480	+				not used
290338.CKO_02349	+				not used
290338.CKO_02345		+
290338.CKO_02635	(+)	(<)
290338.CKO_02633		(<)
290338.CKO_02631			+
290338.CKO_03349			+
290338.CKO_04420	+
290338.CKO_04199				(PF05524)
290338.CKO_01302		(<)
290338.CKO_04513			+
290338.CKO_00853		(>)
290338.CKO_01105	(+)				(plastid)
290338.CKO_05005		(>)
290338.CKO_01073	+
290338.CKO_01255			+
290338.CKO_01251	+
290338.CKO_00331	(+)				(mitochondrial)
290338.CKO_00676	(+)				(mitochondrial); not used
290338.CKO_01545	+
290338.CKO_02156	(+)	+
290338.CKO_02828		(<)
290338.CKO_02287				(PF01228)
290338.CKO_02359	+
290338.CKO_02913	+
290338.CKO_02919				(PF00577)
290338.CKO_02752		(>)
290338.CKO_03531		(>)
290338.CKO_03534		(>)
290338.CKO_02625				(PF00577)
290338.CKO_03407		+
290338.CKO_03405				(PF00577)
290338.CKO_04160	+
290338.CKO_03710				(PF00345)
290338.CKO_03711				(PF00577)
290338.CKO_03860	(+)				(mitochondrial)
290338.CKO_01984	+
290338.CKO_01823	+
290338.CKO_01981	+
290338.CKO_01624	(+)	(<)
290338.CKO_04277	+
290338.CKO_04959	+
290338.CKO_02434	+
290338.CKO_02726	+				not used
290338.CKO_03525			+
290338.CKO_03527		(>)
290338.CKO_03523			+
290338.CKO_03095	+
290338.CKO_04587			+
290338.CKO_04527			+
290338.CKO_00879			+
290338.CKO_00763			+
290338.CKO_00273			+
290338.CKO_05026			+
290338.CKO_05023			+
290338.CKO_01013		+
290338.CKO_00120		(>)
290338.CKO_01703		+
290338.CKO_00059	+
290338.CKO_02421				(PF14330)
290338.CKO_02933		+
290338.CKO_02732	+
290338.CKO_02731	+
290338.CKO_01483	+
290338.CKO_02648	+
290338.CKO_03064	+
290338.CKO_03466				(PF03222)
290338.CKO_03467	+
290338.CKO_00869		(>)
290338.CKO_03282	+
290338.CKO_00465	+
290338.CKO_05047	+
290338.CKO_00037	+				not used
290338.CKO_04034	+
290338.CKO_03844	(+)	+
290338.CKO_01730	+				not used
290338.CKO_01289	+
290338.CKO_01284	+
290338.CKO_04937	+				not used
290338.CKO_02415			+
290338.CKO_02896	+
290338.CKO_02898	+
290338.CKO_02072	(+)				(mitochondrial); not used
290338.CKO_04992	+
290338.CKO_04485	+
290338.CKO_04152	+
290338.CKO_04155	(+)				(mitochondrial)
290338.CKO_04158	(+)				(ER)
290338.CKO_02672			+
290338.CKO_03275	+
290338.CKO_02678			+
290338.CKO_03270	+
290338.CKO_00819		(>)
290338.CKO_03104		(<)
290338.CKO_00922	+
290338.CKO_03135	(+)				(mitochondrial)
290338.CKO_04023	+
290338.CKO_04570		(<)
290338.CKO_00106		+
290338.CKO_03709	+
290338.CKO_01594	+				not used
290338.CKO_01295	+
290338.CKO_04839	(+)				(mitochondrial); not used
290338.CKO_01502		(<)
290338.CKO_02515			+
290338.CKO_02249	+				not used
290338.CKO_02086	+				not used
290338.CKO_02881	(+)				(plastid)
290338.CKO_03446	(+)				(plastid)
290338.CKO_04123		+
290338.CKO_04586	+				not used
290338.CKO_04239				(PF00345)
290338.CKO_04580	+
290338.CKO_03628	+
290338.CKO_04050			+
290338.CKO_01982	+
290338.CKO_01191			+
290338.CKO_01976	+
290338.CKO_00013	+
290338.CKO_01373	+
290338.CKO_04234	+				not used
290338.CKO_00650	+
290338.CKO_03728	(+)	+
290338.CKO_03330	+
290338.CKO_00651	+
290338.CKO_03873		+
290338.CKO_03212		+
290338.CKO_02878	+
290338.CKO_02879	+
290338.CKO_02050		+
290338.CKO_02185	+
290338.CKO_04134			+
290338.CKO_03216		+
290338.CKO_03050	+
290338.CKO_04220			+
290338.CKO_03634	(+)				(mitochondrial); not used
290338.CKO_03651	+
290338.CKO_01988	+
290338.CKO_03831	+
290338.CKO_01969			+
290338.CKO_00764	+
290338.CKO_04510				(PF03313)
290338.CKO_03233				(PF00577)
290338.CKO_04514				(PF01228)
290338.CKO_05084				(PF01501)
290338.CKO_05085				(PF01501)
290338.CKO_05086				(PF01501)
290338.CKO_04859			+
290338.CKO_04867	+				not used
290338.CKO_03801	+
290338.CKO_04862			+
290338.CKO_03802	+
290338.CKO_02713	+
290338.CKO_04674			+
290338.CKO_02867	(+)		+
290338.CKO_02865	(+)		+
290338.CKO_04102	+
290338.CKO_04452				(PF05683)
290338.CKO_03202	+
290338.CKO_00912	+
290338.CKO_00917			+
290338.CKO_04673	+
290338.CKO_03046				(PF05524)
290338.CKO_05075				(PF06176)
290338.CKO_05074	+
290338.CKO_00682		(<)
290338.CKO_01772	+
290338.CKO_00771	+
290338.CKO_00172	+
290338.CKO_01074				(PF00577)
290338.CKO_01421	+
290338.CKO_03803		(<)
290338.CKO_04536	+
290338.CKO_02035	(+)		+
290338.CKO_02326	(+)			(PF00577)
290338.CKO_04808			+
290338.CKO_04110	+
290338.CKO_04207	(+)				(ER)
290338.CKO_03929	(+)	+
290338.CKO_00213		(>)
290338.CKO_00963				(PF00577)
290338.CKO_00364		(>)
290338.CKO_00363			+
290338.CKO_04529	+
290338.CKO_01949			+
290338.CKO_00783		(>)
290338.CKO_00786	+
290338.CKO_03931			+
290338.CKO_01232		(<)
290338.CKO_01438		(>)
290338.CKO_00930	+
290338.CKO_03186	(+)				(ER)
290338.CKO_02207	+
290338.CKO_04607	+
290338.CKO_02991			+
290338.CKO_02338			+
290338.CKO_02442		+
290338.CKO_04472	+
290338.CKO_04470	+				not used
290338.CKO_04274	+
290338.CKO_03773	(+)				(plastid)
290338.CKO_00205				(PF01228)
290338.CKO_04655			+
290338.CKO_00376				(PF05524)
290338.CKO_04091	+
290338.CKO_01155	(+)				(plastid)
290338.CKO_00154			+
290338.CKO_00156	+				not used
290338.CKO_00792	+
290338.CKO_01846	+
290338.CKO_00553			+
290338.CKO_00554	(+)				(ER)
290338.CKO_02014	(+)				(ER)
290338.CKO_00110		(<)
290338.CKO_01249	+
290338.CKO_02239	+
290338.CKO_02232	+				not used
290338.CKO_02780			+
290338.CKO_03901	+
290338.CKO_02310	(+)				(mitochondrial)
290338.CKO_02303		(>)
290338.CKO_02943		+
290338.CKO_02168				(PF01228)
290338.CKO_04548	(+)				(mitochondrial)
290338.CKO_04799		(>)
290338.CKO_00831		(>)
290338.CKO_02551	+				not used
290338.CKO_02934	+
290338.CKO_04533	+
290338.CKO_00530	+
290338.CKO_01855		+
290338.CKO_01213		+
290338.CKO_03437			+
290338.CKO_01330	+
290338.CKO_02313	+				not used
290338.CKO_02953		(>)
290338.CKO_02952		(>)
290338.CKO_02553	(+)				(plastid)
290338.CKO_03572	+
290338.CKO_02559	+
290338.CKO_04986	(+)				(plastid)
290338.CKO_03756	(+)				mitochondrial; not used
290338.CKO_04252			+
290338.CKO_00880			+
290338.CKO_04028		(>)
290338.CKO_04636	+
290338.CKO_05122				(PF00577)
290338.CKO_01139	+
290338.CKO_03963		+
290338.CKO_03147		+
290338.CKO_02922	+
290338.CKO_01869	(+)				(mitochondrial)
290338.CKO_01910	(+)				(mitochondrial); not used
290338.CKO_01917	+
290338.CKO_00534	+
290338.CKO_00586	(+)				(ER)
290338.CKO_03906	+
290338.CKO_00595	+				not used
290338.CKO_03404				(PF00345)
290338.CKO_02968	+
290338.CKO_04316	+
290338.CKO_03364	+
290338.CKO_04628	+
290338.CKO_04621	+
290338.CKO_03188		(>)
290338.CKO_03661	+
290338.CKO_03472			+
290338.CKO_03983	+
290338.CKO_03577	+
290338.CKO_01059			+
290338.CKO_01874			+
290338.CKO_01600	+
290338.CKO_02807		+
290338.CKO_01470			+
290338.CKO_04987	(+)			(PF03222)
290338.CKO_01214			+
290338.CKO_00914	+
290338.CKO_01553	(+)				(plastid)
290338.CKO_01674			+
290338.CKO_03816			+
290338.CKO_02823	(+)				(plastid)
290338.CKO_04963	+
290338.CKO_02971	(+)
290338.CKO_02591	(+)
290338.CKO_02605	(+)
290338.CKO_03429	(+)
290338.CKO_03359	(+)
290338.CKO_04291	(+)
290338.CKO_00510	(+)
290338.CKO_02128	(+)
290338.CKO_03862	(+)
290338.CKO_02344	(+)
290338.CKO_03051	(+)
290338.CKO_02909	(+)
290338.CKO_03502	(+)
290338.CKO_03501	(+)
290338.CKO_04708	(+)
290338.CKO_04351	(+)
290338.CKO_04771	(+)
290338.CKO_01102	(+)				not used
290338.CKO_04984	(+)
290338.CKO_00074	(+)
290338.CKO_00073	(+)
290338.CKO_00078	(+)
290338.CKO_01077	(+)
290338.CKO_00212	(+)
290338.CKO_00706	(+)
290338.CKO_02821	(+)
290338.CKO_01230	(+)				not used
290338.CKO_01540	(+)
290338.CKO_02280	(+)
290338.CKO_02358	(+)
290338.CKO_02354	+
290338.CKO_02357	(+)
290338.CKO_02135	(+)
290338.CKO_02134	(+)
290338.CKO_04362	(+)
290338.CKO_00445	(+)
290338.CKO_00061	(+)
290338.CKO_05014	(+)
290338.CKO_01000	(+)
290338.CKO_01003	(+)
290338.CKO_04670	(+)
290338.CKO_04385	(+)
290338.CKO_01714	+
290338.CKO_02558	(+)
290338.CKO_01533	(+)
290338.CKO_03487	(+)
290338.CKO_04955	(+)
290338.CKO_02921	(+)				not used
290338.CKO_02724	(+)
290338.CKO_03618	(+)
290338.CKO_02656	(+)
290338.CKO_03411	(+)
290338.CKO_03677	(+)
290338.CKO_04009	(+)
290338.CKO_01014	(+)
290338.CKO_01707	(+)
290338.CKO_01706	(+)
290338.CKO_03103	(+)
290338.CKO_01634	(+)				not used
290338.CKO_00560	(+)
290338.CKO_04813	(+)				not used
290338.CKO_00239	(+)
290338.CKO_02029	(+)
290338.CKO_02429	(+)
290338.CKO_04545	(+)
290338.CKO_01867	(+)
290338.CKO_05035	(+)
290338.CKO_01030	(+)
290338.CKO_01282	(+)
290338.CKO_01356	(+)				not used
290338.CKO_01514	(+)
290338.CKO_04932	(+)				not used
290338.CKO_02700	(+)
290338.CKO_02319	(+)
290338.CKO_01738	(+)
290338.CKO_02079	(+)				not used
290338.CKO_03477	(+)
290338.CKO_04270	(+)
290338.CKO_04736	(+)
290338.CKO_00038	(+)
290338.CKO_00873	(+)
290338.CKO_01725	(+)
290338.CKO_02296	(+)
290338.CKO_01596	(+)
290338.CKO_01291	(+)
290338.CKO_01292	(+)
290338.CKO_04830	(+)
290338.CKO_00277	(+)
290338.CKO_04909	(+)
290338.CKO_02248	(+)
290338.CKO_03225	(+)
290338.CKO_02885	(+)
290338.CKO_02067	(+)
290338.CKO_02401	(+)
290338.CKO_00806	(+)
290338.CKO_00800	(+)
290338.CKO_04585	(+)				not used
290338.CKO_00244	(+)				not used
290338.CKO_03825	(+)
290338.CKO_00011	(+)
290338.CKO_00758	(+)
290338.CKO_01570	(+)
290338.CKO_04454	(+)
290338.CKO_00386	(+)
290338.CKO_02509	(+)
290338.CKO_02471	(+)
290338.CKO_03134	(+)
290338.CKO_00232	(+)
290338.CKO_03124	(+)
290338.CKO_00904	(+)
290338.CKO_04216	(+)
290338.CKO_00341	(+)
290338.CKO_00344	(+)
290338.CKO_05065	(+)
290338.CKO_04606	(+)
290338.CKO_03839	(+)
290338.CKO_00169	(+)
290338.CKO_01968	(+)
290338.CKO_04508	(+)				not used
290338.CKO_01748	(+)
290338.CKO_04511	(+)
290338.CKO_04850	(+)
290338.CKO_02816	(+)				not used
290338.CKO_02814	(+)				not used
290338.CKO_03807	(+)
290338.CKO_02268	(+)
290338.CKO_02869	(+)
290338.CKO_02048	(+)
290338.CKO_03669	(+)
290338.CKO_02190	(+)				not used
290338.CKO_04507	(+)
290338.CKO_02680	(+)
290338.CKO_00829	(+)
290338.CKO_05073	(+)
290338.CKO_00356	(+)
290338.CKO_04834	(+)
290338.CKO_00175	(+)
290338.CKO_01791	(+)
290338.CKO_01448	(+)
290338.CKO_02852	(+)
290338.CKO_04112	(+)
290338.CKO_00967	(+)
290338.CKO_04066	(+)
290338.CKO_01182	(+)
290338.CKO_01894	(+)
290338.CKO_01892	(+)
290338.CKO_01095	(+)
290338.CKO_01782	(+)				not used
290338.CKO_01787	(+)				not used
290338.CKO_01789	(+)
290338.CKO_02831	(+)
290338.CKO_02846	(+)
290338.CKO_04601	(+)
290338.CKO_04751	(+)
290338.CKO_00202	(+)
290338.CKO_00025	(+)
290338.CKO_04302	(+)
290338.CKO_01153	(+)
290338.CKO_00794	(+)
290338.CKO_04456	(+)
290338.CKO_00035	(+)				not used
290338.CKO_01444	(+)
290338.CKO_02782	(+)
290338.CKO_02164	(+)
290338.CKO_02169	(+)
290338.CKO_03019	(+)
290338.CKO_03010	(+)				not used
290338.CKO_04267	(+)				not used
290338.CKO_04266	(+)
290338.CKO_04649	(+)
290338.CKO_04088	(+)
290338.CKO_04540	(+)
290338.CKO_05138	(+)
290338.CKO_02684	(+)
290338.CKO_00269	(+)
290338.CKO_04416	(+)
290338.CKO_00632	(+)
290338.CKO_05101	(+)
290338.CKO_00637	(+)				not used
290338.CKO_03118	(+)
290338.CKO_04729	(+)
290338.CKO_04086	(+)
290338.CKO_03893	(+)
290338.CKO_02954	(+)				not used
290338.CKO_03578	(+)
290338.CKO_03686	(+)
290338.CKO_04321	(+)
290338.CKO_01048	(+)				not used
290338.CKO_00627	(+)
290338.CKO_00626	(+)
290338.CKO_03492	(+)
290338.CKO_00112	(+)
290338.CKO_00398	(+)
290338.CKO_03617	(+)
290338.CKO_02560	(+)
290338.CKO_03312	(+)
290338.CKO_01850	(+)
290338.CKO_04914	(+)
290338.CKO_03693	(+)
290338.CKO_02331	(+)
290338.CKO_00432	(+)
290338.CKO_00185	(+)
290338.CKO_03985	(+)
290338.CKO_03984	(+)
290338.CKO_01698	(+)
290338.CKO_01872	(+)
290338.CKO_03974	(+)
290338.CKO_03396	(+)
290338.CKO_01673	(+)				not used
290338.CKO_04200	(+)
290338.CKO_04967	(+)
290338.CKO_02377	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.5 (5/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================