Metamenu

Effective results for Aurantimonas manganoxydans SI85-9A1 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 62
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 75 proteins (2 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
287752.SI859A1_02862+(PF03480)ER
287752.SI859A1_03655+ER
287752.SI859A1_02525(PF00669)(mitochondrial); plastid
287752.SI859A1_01385(PF03480)mitochondrial
287752.SI859A1_00281(PF03480)mitochondrial
287752.SI859A1_02025(PF03480)ER
287752.SI859A1_01644+(ER); (mitochondrial)
287752.SI859A1_00600(PF00669)mitochondrial
287752.SI859A1_02502(PF00669)(mitochondrial); plastid
287752.SI859A1_01077+mitochondrial; (mitochondrial)
287752.SI859A1_03240+mitochondrial; (mitochondrial)
287752.SI859A1_01660+mitochondrial; plastid
287752.SI859A1_00137(PF03480)(ER)
287752.SI859A1_00057(PF03480)ER
287752.SI859A1_01049+ER
287752.SI859A1_00494(PF00669)mitochondrial; plastid
287752.SI859A1_01068+ER
287752.SI859A1_02155+(ER)
287752.SI859A1_01339+ER; (ER)
287752.SI859A1_00303(PF03480)ER
287752.SI859A1_01489(PF03480)ER
287752.SI859A1_00987+ER
287752.SI859A1_03328(PF03480)ER
287752.SI859A1_03188+(ER)
287752.SI859A1_01369(PF03480)ER
287752.SI859A1_02695(PF03480)ER
287752.SI859A1_02587+ER
287752.SI859A1_02483+(mitochondrial); plastid
287752.SI859A1_01743(PF03480)ER
287752.SI859A1_00504(PF03480)ER
287752.SI859A1_00426+ER
287752.SI859A1_01636+(mitochondrial)
287752.SI859A1_03449PF10712ER; (ER)
287752.SI859A1_02398+(PF00669)plastid
287752.SI859A1_01283+ER
287752.SI859A1_02524(PF00669)plastid
287752.SI859A1_02523(PF00669)plastid
287752.SI859A1_02522(PF00669)plastid
287752.SI859A1_02521(PF00669)plastid
287752.SI859A1_02520(PF00669)plastid
287752.SI859A1_00064(PF03480)(ER)
287752.SI859A1_02518(PF00669)plastid
287752.SI859A1_02519(PF00669)plastid
287752.SI859A1_00470(PF02788) (PF00016)
287752.SI859A1_00105(PF03480)(ER)
287752.SI859A1_00101(PF02788) (PF00016)
287752.SI859A1_00829PF05335(ER)
287752.SI859A1_02576(PF03480)(ER)
287752.SI859A1_01211+(mitochondrial)
287752.SI859A1_02236+(plastid)
287752.SI859A1_00741+(mitochondrial)
287752.SI859A1_02625(PF00016) (PF02788)
287752.SI859A1_00661(PF03480)(mitochondrial)
287752.SI859A1_00666(PF03480)(mitochondrial)
287752.SI859A1_02829+ER
287752.SI859A1_03470(PF00872)
287752.SI859A1_01380(PF02615)
287752.SI859A1_01735(PF03480)
287752.SI859A1_02831+
287752.SI859A1_02284(PF00872)
287752.SI859A1_00115(PF02615)
287752.SI859A1_00070+
287752.SI859A1_02293+
287752.SI859A1_01255(PF00872)
287752.SI859A1_02298(PF00872)
287752.SI859A1_02506+
287752.SI859A1_01404+
287752.SI859A1_01664+
287752.SI859A1_01874+
287752.SI859A1_00835(PF03480)
287752.SI859A1_01271+
287752.SI859A1_00636(PF03480)
287752.SI859A1_00123(PF03480)
287752.SI859A1_00330(PF03480)
287752.SI859A1_00934(PF00872)
287752.SI859A1_00808(PF00872)
287752.SI859A1_03350+
287752.SI859A1_01269(PF00872)
287752.SI859A1_02792+
287752.SI859A1_00481(PF00872)
287752.SI859A1_01459(PF00614)
287752.SI859A1_02845+
287752.SI859A1_01857+
287752.SI859A1_02303+
287752.SI859A1_02235(PF00872)
287752.SI859A1_02234(PF00872)
287752.SI859A1_00001(PF00872)
287752.SI859A1_01845+
287752.SI859A1_03150+
287752.SI859A1_03158+
287752.SI859A1_00178(PF03480)
287752.SI859A1_00776(PF00872)
287752.SI859A1_01784+
287752.SI859A1_01783(PF00872)
287752.SI859A1_00307(PF02615)
287752.SI859A1_00945+
287752.SI859A1_03524+
287752.SI859A1_02145(PF00872)
287752.SI859A1_00762+
287752.SI859A1_01488(PF02615)
287752.SI859A1_01582+
287752.SI859A1_00229+
287752.SI859A1_03336+
287752.SI859A1_02118(PF00872)
287752.SI859A1_02119(PF00872)
287752.SI859A1_02643(PF01234)
287752.SI859A1_01113(PF00872)
287752.SI859A1_01605(PF01442)
287752.SI859A1_03670(PF00872)
287752.SI859A1_03079+
287752.SI859A1_02079(PF00614)
287752.SI859A1_00500+
287752.SI859A1_02491+
287752.SI859A1_01638+
287752.SI859A1_01757(PF00872)
287752.SI859A1_02399+
287752.SI859A1_03662(PF00872)
287752.SI859A1_01355(PF00872)
287752.SI859A1_03066+
287752.SI859A1_00532(PF02615)
287752.SI859A1_00665(PF03480)
287752.SI859A1_00091(PF00872)
287752.SI859A1_00095(PF00872)
287752.SI859A1_00094(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================