Effective results for Pseudogulbenkiania ferrooxidans 2002 (eggnog40)

Summary

Number of putative secreted proteins: 395
- Predicted by EffectiveT3: 112 (high confidence), 216 (low confidence)
- Predicted by EffectiveCCBD: 13 within, 9 before, 28 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
279714.FuraDRAFT_2682(>)(ER)
279714.FuraDRAFT_2892+(mitochondrial)
279714.FuraDRAFT_2091(<)(ER)
279714.FuraDRAFT_0364(PF03924)ER
279714.FuraDRAFT_3425(PF03924)ER
279714.FuraDRAFT_0661+(mitochondrial); (plastid)
279714.FuraDRAFT_3390(>)(ER)
279714.FuraDRAFT_1003(PF02239)(ER); (mitochondrial)
279714.FuraDRAFT_0992(PF02239)ER
279714.FuraDRAFT_1131+(mitochondrial)
279714.FuraDRAFT_2740(PF03924)ER
279714.FuraDRAFT_0524(PF02239)ER
279714.FuraDRAFT_1572+(mitochondrial)
279714.FuraDRAFT_0857+(mitochondrial); plastid
279714.FuraDRAFT_0073(>)mitochondrial
279714.FuraDRAFT_3374(+)(>)ER
279714.FuraDRAFT_2048+ER
279714.FuraDRAFT_3194(>)ER
279714.FuraDRAFT_2352+mitochondrial; (plastid)
279714.FuraDRAFT_3200(+)(PF00342)mitochondrial
279714.FuraDRAFT_3020+(mitochondrial)
279714.FuraDRAFT_2644(>)ER
279714.FuraDRAFT_0087+(ER)
279714.FuraDRAFT_3026(>)ER
279714.FuraDRAFT_2125(>)(ER); (mitochondrial)
279714.FuraDRAFT_2014(>)(mitochondrial)
279714.FuraDRAFT_3350+(ER)
279714.FuraDRAFT_1044+(mitochondrial)
279714.FuraDRAFT_1106+(mitochondrial)
279714.FuraDRAFT_0315(PF02239)ER
279714.FuraDRAFT_2810+ER; (ER)
279714.FuraDRAFT_3814(>)ER
279714.FuraDRAFT_1798+(<)plastid
279714.FuraDRAFT_0201+ER
279714.FuraDRAFT_3231(>)ER; (ER)
279714.FuraDRAFT_2878+ER; (ER)
279714.FuraDRAFT_1650(>)(ER)
279714.FuraDRAFT_3878(PF03924)ER
279714.FuraDRAFT_3076PF05548mitochondrial; ER
279714.FuraDRAFT_3079PF05548ER
279714.FuraDRAFT_2218(>)ER
279714.FuraDRAFT_3449+(plastid)
279714.FuraDRAFT_3281(+)mitochondrial; (ER)
279714.FuraDRAFT_1758(+)(mitochondrial); plastid
279714.FuraDRAFT_3548(+)(mitochondrial)
279714.FuraDRAFT_3569+(plastid)
279714.FuraDRAFT_3571+plastid
279714.FuraDRAFT_1712(+)(mitochondrial)
279714.FuraDRAFT_1000+(PF02239)
279714.FuraDRAFT_3163+(plastid)
279714.FuraDRAFT_1859(PF09585)(mitochondrial)
279714.FuraDRAFT_2646(+)mitochondrial; ER
279714.FuraDRAFT_2932(+)ER; (ER)
279714.FuraDRAFT_0938+(plastid)
279714.FuraDRAFT_2312(+)mitochondrial
279714.FuraDRAFT_1543(+)(mitochondrial); (plastid)
279714.FuraDRAFT_3919+(plastid)
279714.FuraDRAFT_1313+(plastid)
279714.FuraDRAFT_3854+(plastid)
279714.FuraDRAFT_3920(+)(ER)
279714.FuraDRAFT_1565+
279714.FuraDRAFT_0168+
279714.FuraDRAFT_0163+
279714.FuraDRAFT_0012(>)
279714.FuraDRAFT_3066(<)
279714.FuraDRAFT_3594(>)
279714.FuraDRAFT_0752(>)
279714.FuraDRAFT_1755(+)(ER)
279714.FuraDRAFT_1029+
279714.FuraDRAFT_1370+
279714.FuraDRAFT_0155+
279714.FuraDRAFT_3438+
279714.FuraDRAFT_1436+
279714.FuraDRAFT_2526+
279714.FuraDRAFT_0923+
279714.FuraDRAFT_0819+
279714.FuraDRAFT_0814(<)
279714.FuraDRAFT_0960+
279714.FuraDRAFT_0495(PF05690)
279714.FuraDRAFT_2391+
279714.FuraDRAFT_2390+
279714.FuraDRAFT_1777+
279714.FuraDRAFT_1771+
279714.FuraDRAFT_1778(+)(plastid)
279714.FuraDRAFT_1779+
279714.FuraDRAFT_2750(+)(plastid)
279714.FuraDRAFT_0559(>)
279714.FuraDRAFT_2773+
279714.FuraDRAFT_0730+
279714.FuraDRAFT_3562(+)(ER)
279714.FuraDRAFT_3561+
279714.FuraDRAFT_3899+not used
279714.FuraDRAFT_1948+
279714.FuraDRAFT_1804(>)
279714.FuraDRAFT_1011+
279714.FuraDRAFT_0547(>)
279714.FuraDRAFT_0540+
279714.FuraDRAFT_1491+
279714.FuraDRAFT_2763(PF05690)
279714.FuraDRAFT_0723+
279714.FuraDRAFT_1780+
279714.FuraDRAFT_0054+
279714.FuraDRAFT_3623(+)(mitochondrial)
279714.FuraDRAFT_3711(PF03924)
279714.FuraDRAFT_3570+
279714.FuraDRAFT_3572+
279714.FuraDRAFT_3848(>)
279714.FuraDRAFT_2370(+)(plastid)
279714.FuraDRAFT_2570+
279714.FuraDRAFT_1828(>)
279714.FuraDRAFT_1489+
279714.FuraDRAFT_2599+
279714.FuraDRAFT_0445+
279714.FuraDRAFT_1137+
279714.FuraDRAFT_0264+
279714.FuraDRAFT_0261+not used
279714.FuraDRAFT_1752+
279714.FuraDRAFT_1051+
279714.FuraDRAFT_2367+
279714.FuraDRAFT_2567+
279714.FuraDRAFT_2292(>)
279714.FuraDRAFT_2297+
279714.FuraDRAFT_1857+
279714.FuraDRAFT_2631(PF00342)
279714.FuraDRAFT_1587(+)(>)
279714.FuraDRAFT_2368+
279714.FuraDRAFT_3771+
279714.FuraDRAFT_3204+
279714.FuraDRAFT_1932+
279714.FuraDRAFT_1936+
279714.FuraDRAFT_0518+
279714.FuraDRAFT_2649+
279714.FuraDRAFT_2645(+)(plastid)
279714.FuraDRAFT_0646(PF03959)
279714.FuraDRAFT_0643(PF05690)
279714.FuraDRAFT_1203+
279714.FuraDRAFT_0243+
279714.FuraDRAFT_3021(+)(ER)
279714.FuraDRAFT_2345+
279714.FuraDRAFT_3527+
279714.FuraDRAFT_2587+
279714.FuraDRAFT_0655+
279714.FuraDRAFT_0987(<)
279714.FuraDRAFT_0098+
279714.FuraDRAFT_0251+
279714.FuraDRAFT_2382+
279714.FuraDRAFT_2383(+)(plastid)
279714.FuraDRAFT_2388+
279714.FuraDRAFT_3685(+)(plastid)
279714.FuraDRAFT_2234+
279714.FuraDRAFT_1681+
279714.FuraDRAFT_3821+
279714.FuraDRAFT_0409+
279714.FuraDRAFT_1860(PF09585)
279714.FuraDRAFT_2466+
279714.FuraDRAFT_0793+
279714.FuraDRAFT_0795(PF00342)
279714.FuraDRAFT_0798+
279714.FuraDRAFT_1358(+)(plastid)
279714.FuraDRAFT_0134(<)
279714.FuraDRAFT_3437(>)
279714.FuraDRAFT_3053(>)
279714.FuraDRAFT_1519(+)(mitochondrial)
279714.FuraDRAFT_2321+
279714.FuraDRAFT_1670+
279714.FuraDRAFT_2784+
279714.FuraDRAFT_2477+
279714.FuraDRAFT_1255+
279714.FuraDRAFT_1528+
279714.FuraDRAFT_1324(<)
279714.FuraDRAFT_0128(+)(plastid)
279714.FuraDRAFT_0912+
279714.FuraDRAFT_3331+
279714.FuraDRAFT_2269+
279714.FuraDRAFT_0422+
279714.FuraDRAFT_1887+
279714.FuraDRAFT_1538+
279714.FuraDRAFT_0681(+)(plastid)
279714.FuraDRAFT_3232(+)plastid
279714.FuraDRAFT_0113+
279714.FuraDRAFT_0111(>)
279714.FuraDRAFT_3235+
279714.FuraDRAFT_3477(PF12513)
279714.FuraDRAFT_0437+
279714.FuraDRAFT_0748(+)(ER)
279714.FuraDRAFT_0690+
279714.FuraDRAFT_0691+
279714.FuraDRAFT_1341+
279714.FuraDRAFT_3480(+)+
279714.FuraDRAFT_0704(>)
279714.FuraDRAFT_2208+
279714.FuraDRAFT_2515+
279714.FuraDRAFT_2195+
279714.FuraDRAFT_1429(>)
279714.FuraDRAFT_3917+
279714.FuraDRAFT_3914+
279714.FuraDRAFT_1515(<)
279714.FuraDRAFT_0142(<)
279714.FuraDRAFT_3807+
279714.FuraDRAFT_3303+
279714.FuraDRAFT_2329+
279714.FuraDRAFT_3673(+)(plastid)
279714.FuraDRAFT_1848+
279714.FuraDRAFT_3674(+)(mitochondrial)
279714.FuraDRAFT_3857(+)(mitochondrial)
279714.FuraDRAFT_2509+
279714.FuraDRAFT_1988+
279714.FuraDRAFT_2185+
279714.FuraDRAFT_2188+
279714.FuraDRAFT_2189(+)(ER)
279714.FuraDRAFT_3153+
279714.FuraDRAFT_3921(PF05690)
279714.FuraDRAFT_1365(+)
279714.FuraDRAFT_1361(+)
279714.FuraDRAFT_1166(+)
279714.FuraDRAFT_0162(+)
279714.FuraDRAFT_3265(+)
279714.FuraDRAFT_3113(+)
279714.FuraDRAFT_3067(+)
279714.FuraDRAFT_2225(+)
279714.FuraDRAFT_2224(+)
279714.FuraDRAFT_2222(+)
279714.FuraDRAFT_1992(+)
279714.FuraDRAFT_1999(+)
279714.FuraDRAFT_1191(+)
279714.FuraDRAFT_1197(+)
279714.FuraDRAFT_1281(+)
279714.FuraDRAFT_2710(+)
279714.FuraDRAFT_2715(+)
279714.FuraDRAFT_2719(+)
279714.FuraDRAFT_1374(+)
279714.FuraDRAFT_0481(+)
279714.FuraDRAFT_0151(+)
279714.FuraDRAFT_0159(+)
279714.FuraDRAFT_3059(+)
279714.FuraDRAFT_2088(+)
279714.FuraDRAFT_0534(+)
279714.FuraDRAFT_0565(+)
279714.FuraDRAFT_2705(+)
279714.FuraDRAFT_2455(+)
279714.FuraDRAFT_2412(+)
279714.FuraDRAFT_1505(+)
279714.FuraDRAFT_3041(+)
279714.FuraDRAFT_2958(+)
279714.FuraDRAFT_2952(+)
279714.FuraDRAFT_1773(+)
279714.FuraDRAFT_0740(+)not used
279714.FuraDRAFT_0553(+)
279714.FuraDRAFT_0821(+)
279714.FuraDRAFT_1396(+)
279714.FuraDRAFT_0603(+)
279714.FuraDRAFT_0609(+)
279714.FuraDRAFT_3306(+)
279714.FuraDRAFT_2759(+)
279714.FuraDRAFT_0043(+)
279714.FuraDRAFT_0042(+)
279714.FuraDRAFT_3707(+)
279714.FuraDRAFT_3090(+)
279714.FuraDRAFT_3143(+)
279714.FuraDRAFT_3142(+)
279714.FuraDRAFT_1704(+)
279714.FuraDRAFT_1707(+)
279714.FuraDRAFT_1806(+)
279714.FuraDRAFT_0946(+)
279714.FuraDRAFT_1127(+)
279714.FuraDRAFT_3396(+)
279714.FuraDRAFT_3886(+)
279714.FuraDRAFT_2577(+)
279714.FuraDRAFT_1621(+)
279714.FuraDRAFT_2757(+)
279714.FuraDRAFT_1009(+)
279714.FuraDRAFT_1006(+)
279714.FuraDRAFT_0539(+)
279714.FuraDRAFT_2591(+)
279714.FuraDRAFT_0993(+)
279714.FuraDRAFT_0991(+)
279714.FuraDRAFT_0440(+)
279714.FuraDRAFT_0289(+)
279714.FuraDRAFT_0843(+)
279714.FuraDRAFT_0666(+)
279714.FuraDRAFT_1221(+)
279714.FuraDRAFT_3642(+)
279714.FuraDRAFT_0269(+)
279714.FuraDRAFT_3501(+)
279714.FuraDRAFT_2964(+)
279714.FuraDRAFT_3186(+)
279714.FuraDRAFT_3188(+)
279714.FuraDRAFT_2564(+)
279714.FuraDRAFT_3915(+)
279714.FuraDRAFT_1035(+)not used
279714.FuraDRAFT_1455(+)
279714.FuraDRAFT_1458(+)
279714.FuraDRAFT_0676(+)
279714.FuraDRAFT_3519(+)
279714.FuraDRAFT_3513(+)
279714.FuraDRAFT_3514(+)
279714.FuraDRAFT_3177(+)
279714.FuraDRAFT_3192(+)
279714.FuraDRAFT_1597(+)
279714.FuraDRAFT_0862(+)
279714.FuraDRAFT_0883(+)
279714.FuraDRAFT_0084(+)
279714.FuraDRAFT_0080(+)
279714.FuraDRAFT_0593(+)
279714.FuraDRAFT_0921(+)
279714.FuraDRAFT_2832(+)
279714.FuraDRAFT_3924(+)
279714.FuraDRAFT_0507(+)
279714.FuraDRAFT_2429(+)
279714.FuraDRAFT_2313(+)
279714.FuraDRAFT_0475(+)
279714.FuraDRAFT_0878(+)
279714.FuraDRAFT_0879(+)
279714.FuraDRAFT_0874(+)
279714.FuraDRAFT_0875(+)
279714.FuraDRAFT_0895(+)
279714.FuraDRAFT_0650(+)
279714.FuraDRAFT_3418(+)
279714.FuraDRAFT_0255(+)
279714.FuraDRAFT_0252(+)
279714.FuraDRAFT_0253(+)
279714.FuraDRAFT_3751(+)
279714.FuraDRAFT_2938(+)
279714.FuraDRAFT_2248(+)not used
279714.FuraDRAFT_2482(+)
279714.FuraDRAFT_1913(+)
279714.FuraDRAFT_1915(+)
279714.FuraDRAFT_1685(+)
279714.FuraDRAFT_1046(+)
279714.FuraDRAFT_1049(+)
279714.FuraDRAFT_1865(+)
279714.FuraDRAFT_0671(+)
279714.FuraDRAFT_0317(+)
279714.FuraDRAFT_0316(+)
279714.FuraDRAFT_0137(+)
279714.FuraDRAFT_3033(+)
279714.FuraDRAFT_3322(+)
279714.FuraDRAFT_2324(+)
279714.FuraDRAFT_2493(+)
279714.FuraDRAFT_2495(+)
279714.FuraDRAFT_1833(+)
279714.FuraDRAFT_2079(+)
279714.FuraDRAFT_1071(+)
279714.FuraDRAFT_3813(+)not used
279714.FuraDRAFT_1415(+)
279714.FuraDRAFT_2479(+)
279714.FuraDRAFT_0785(+)
279714.FuraDRAFT_2035(+)
279714.FuraDRAFT_3799(+)
279714.FuraDRAFT_3240(+)
279714.FuraDRAFT_1662(+)
279714.FuraDRAFT_3804(+)
279714.FuraDRAFT_0429(+)
279714.FuraDRAFT_1883(+)
279714.FuraDRAFT_2447(+)
279714.FuraDRAFT_2444(+)
279714.FuraDRAFT_1797(+)
279714.FuraDRAFT_0332(+)
279714.FuraDRAFT_0689(+)
279714.FuraDRAFT_1187(+)
279714.FuraDRAFT_1086(+)
279714.FuraDRAFT_1008(+)
279714.FuraDRAFT_2060(+)
279714.FuraDRAFT_0489(+)
279714.FuraDRAFT_0112(+)
279714.FuraDRAFT_0114(+)
279714.FuraDRAFT_2316(+)
279714.FuraDRAFT_1984(+)
279714.FuraDRAFT_2305(+)
279714.FuraDRAFT_3270(+)
279714.FuraDRAFT_3279(+)
279714.FuraDRAFT_2057(+)
279714.FuraDRAFT_3904(+)
279714.FuraDRAFT_1542(+)
279714.FuraDRAFT_0211(+)
279714.FuraDRAFT_1177(+)
279714.FuraDRAFT_3004(+)
279714.FuraDRAFT_2204(+)
279714.FuraDRAFT_3850(+)
279714.FuraDRAFT_0914(+)
279714.FuraDRAFT_0591(+)
279714.FuraDRAFT_0007(+)
279714.FuraDRAFT_0006(+)
279714.FuraDRAFT_1022(+)
279714.FuraDRAFT_1843(+)
279714.FuraDRAFT_0229(+)
279714.FuraDRAFT_3075(+)
279714.FuraDRAFT_2214(+)
279714.FuraDRAFT_2215(+)not used
279714.FuraDRAFT_3478(+)
279714.FuraDRAFT_3926(+)
279714.FuraDRAFT_1748(+)
279714.FuraDRAFT_1744(+)
279714.FuraDRAFT_3154(+)
279714.FuraDRAFT_2431(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================