Effective results for Rickettsia sibirica 246 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 40
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 8 proteins (6 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
272951.34581262				PF03219	(ER)
272951.34581014				PF02326	ER
72951.3458058			+		-
72951.3458117			+		-
72951.3458118			+		-
72951.3458090			+		-
72951.3458158			+		-
272951.34580428				PF03219
72951.3458096			+		-
272951.34581305				(PF02902)
72951.3458152			+		-
72951.3458155			+		-
72951.3458160			+		-
72951.3458063			+		-
72951.3458078			+		-
72951.3458077			+		-
72951.3458153			+		-
72951.3458106			+		-
72951.3458107			+		-
272951.34580560				PF03219
272951.34580960				PF03219
72951.3458150			+		-
72951.3458095			+		-
72951.3458121			+		-
72951.3458			+		-
72951.3458132			+		-
72951.3458049			+		-
72951.3458042			+		-
72951.3458043			+		-
72951.3458062			+		-
72951.345807			+		-
72951.3458075			+		-
72951.3458069			+		-
272951.34580415				(PF09825)
72951.3458154			+		-
72951.3458054			+		-
72951.3458055			+		-
72951.3458056			+		-
72951.3458051			+		-
272951.34581599				PF03219
72951.3458144			+		-
72951.3458145			+		-
72951.3458087			+		-
72951.3458085			+		-
72951.3458128			+		-
72951.3458120			+		-
72951.3458123			+		-
72951.3458065			+		-

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.6 (16/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================