Effective results for Rhodobacter capsulatus SB 1003 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 30 proteins (0 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272942.RCAP_rcc00122(PF13704)mitochondrial
272942.RCAP_rcc00123(PF13704)mitochondrial
272942.RCAP_rcc00647(PF04413)ER
272942.RCAP_rcc02532(PF03209)mitochondrial
272942.RCAP_rcc03279(PF00148)(mitochondrial)
272942.RCAP_rcc00672(PF03209)ER
272942.RCAP_rcc00660(PF03209)ER
272942.RCAP_rcc00121(PF02485)plastid
272942.RCAP_rcc02234(PF00148)(ER)
272942.RCAP_rcc00702(PF10013)(mitochondrial); not used
272942.RCAP_rcc00230(PF04413)
272942.RCAP_rcc02263(PF13704)
272942.RCAP_rcc00648(PF04413)
272942.RCAP_rcc00586(PF00148)
272942.RCAP_rcc00588(PF00148)
272942.RCAP_rcc02196(PF13704)
272942.RCAP_rcc00689(PF00148)
272942.RCAP_rcc00688(PF00148)
272942.RCAP_rcc02235(PF00148)
272942.RCAP_rcc03018(PF05706)
272942.RCAP_rcc00571(PF00148)
272942.RCAP_rcc00570(PF00148)
272942.RCAP_rcc02969(PF09458)
272942.RCAP_rcc02483(PF02485)
272942.RCAP_rcc01583(PF13704)
272942.RCAP_rcc01582(PF13704)
272942.RCAP_rcc03280(PF00148)
272942.RCAP_rcc00665(PF00148)
272942.RCAP_rcc00664(PF00148)
272942.RCAP_rcc00719(PF13704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================