Metamenu

Effective results for Chlamydia trachomatis D/UW-3/CX (eggnog40)

Summary

Number of putative secreted proteins: 142
- Predicted by EffectiveT3: 52 (high confidence), 52 (low confidence)
- Predicted by EffectiveCCBD: 7 within, 7 before, 12 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 18 proteins (10 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272561.CT414+PF02415ER; (ER)
272561.CT257(>)ER
272561.CT035(PF09825)(mitochondrial)
272561.CT869PF02415ER
272561.CT166+(mitochondrial)
272561.CT548(>)ER
272561.CT371(>)ER
272561.CT871PF02415ER
272561.CT872PF02415ER
272561.CT230+(ER); (mitochondrial)
272561.CT800(<)(mitochondrial); mitochondrial
272561.CT744+(ER)
272561.CT415(>)ER
272561.CT413PF02415ER
272561.CT352(<)mitochondrial
272561.CT812PF02415(ER)
272561.CT075+mitochondrial; (mitochondrial)
272561.CT495(PF03219)(ER)
272561.CT618(+)(mitochondrial); plastid
272561.CT868+PF02902
272561.CT463(+)(mitochondrial)
272561.CT164+(plastid)
272561.CT005+(plastid)
272561.CT060(<)(ER)
272561.CT874PF02415(ER)
272561.CT585(<)(mitochondrial)
272561.CT153(PF01823)(ER)
272561.CT157+(plastid)
272561.CT300+(plastid)
272561.CT440+(>)
272561.CT119+plastid
272561.CT742(>)(mitochondrial)
272561.CT643(PF02201)(mitochondrial)
272561.CT412+PF02415
272561.CT267(+)(mitochondrial)
272561.CT025(+)mitochondrial; (mitochondrial)
272561.CT358+plastid
272561.CT357+(plastid)
272561.CT749(+)mitochondrial
272561.CT105+(plastid)
272561.CT087+(mitochondrial)
272561.CT656+
272561.CT227(+)(plastid)
272561.CT047+
272561.CT049+
272561.CT034+
272561.CT133+
272561.CT348(<)
272561.CT298+
272561.CT862(PF07720)
272561.CT721+
272561.CT867(+)PF02902
272561.CT460(PF02201)
272561.CT663(>)
272561.CT282(>)
272561.CT167+
272561.CT717+
272561.CT711+
272561.CT829(<)
272561.CT766+
272561.CT769(<)
272561.CT544(>)
272561.CT622+
272561.CT782(>)
272561.CT196+
272561.CT194+
272561.CT694+
272561.CT576(+)(PF07720)
272561.CT672(>)
272561.CT154+
272561.CT848+
272561.CT849+
272561.CT695+
272561.CT442+
272561.CT449(+)(ER)
272561.CT392+
272561.CT395+
272561.CT008(+)plastid
272561.CT228+
272561.CT065(PF03219)
272561.CT229(+)(plastid)
272561.CT112+
272561.CT365+
272561.CT366+
272561.CT362(+)(mitochondrial)
272561.CT578+
272561.CT579+
272561.CT483(+)plastid
272561.CT233+
272561.CT232+
272561.CT260+
272561.CT344+
272561.CT737+
272561.CT144+
272561.CT147+
272561.CT326+
272561.CT456+
272561.CT863+
272561.CT860+
272561.CT813+
272561.CT313(>)
272561.CT082+
272561.CT088+
272561.CT497(+)
272561.CT554(+)
272561.CT652(+)
272561.CT796(+)
272561.CT135(+)
272561.CT613(+)
272561.CT292(+)
272561.CT686(+)
272561.CT469(+)
272561.CT467(+)
272561.CT165(+)
272561.CT309(+)
272561.CT545(+)
272561.CT621(+)
272561.CT450(+)
272561.CT387(+)
272561.CT531(+)
272561.CT050(+)
272561.CT275(+)
272561.CT376(+)
272561.CT384(+)
272561.CT875(+)
272561.CT755(+)
272561.CT575(+)
272561.CT018(+)
272561.CT205(+)
272561.CT155(+)
272561.CT847(+)
272561.CT066(+)
272561.CT118(+)
272561.CT368(+)
272561.CT138(+)
272561.CT565(+)
272561.CT222(+)
272561.CT223(+)
272561.CT329(+)
272561.CT280(+)
272561.CT861(+)
272561.CT772(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================