Effective results for Bacillus halodurans C-125 (eggnog40)

Summary

Number of putative secreted proteins: 82
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 82 proteins (41 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
272558.BH0119				(PF00298) (PF03946)	mitochondrial; (mitochondrial)
272558.BH3600				PF13863	ER
272558.BH1312				(PF06695)	ER
272558.BH0279				(PF09683)	ER
272558.BH0785				(PF03644)	ER
272558.BH0413				(PF03423)	ER
272558.BH1234				(PF06695)	ER
272558.BH2765				(PF02812) (PF00208)
272558.BH2774				PF01610	(mitochondrial)
272558.BH2967				PF01610	(mitochondrial)
272558.BH0824				(PF02812) (PF00208)
272558.BH0218				(PF02812) (PF00208)
272558.BH1307				PF01610	(mitochondrial)
272558.BH0270				PF01610	(mitochondrial)
272558.BH2101				(PF02812) (PF00208)
272558.BH0245				PF01610	(mitochondrial)
272558.BH0409				(PF00298) (PF03946)
272558.BH1170				PF01610	(mitochondrial)
272558.BH3942				(PF02812) (PF00208)
272558.BH2718				(PF02812) (PF00208)
272558.BH1622				(PF02812) (PF00208)
272558.BH3565				PF01610
272558.BH1701				PF01610
272558.BH4005				(PF05598)
272558.BH4009				(PF06445)
272558.BH2377				PF01610
272558.BH1049				PF01610
272558.BH0123				PF01610
272558.BH1054				(PF05598)
272558.BH0057				(PF00398)
272558.BH1473				PF01610
272558.BH1183				PF01610
272558.BH2978				PF01610
272558.BH2979				(PF07653)
272558.BH3752				PF01610
272558.BH0594				(PF06445)
272558.BH3247				PF01610
272558.BH0981				(PF05598)
272558.BH2696				(PF05598)
272558.BH3634				(PF06445)
272558.BH3635				(PF05598)
272558.BH3633				(PF06445)
272558.BH1412				PF01610
272558.BH2204				PF01610
272558.BH3137				PF01610
272558.BH0682				(PF05598)
272558.BH0668				PF01610
272558.BH1427				(PF05598)
272558.BH1338				PF01610
272558.BH2651				PF01610
272558.BH3499				PF01610
272558.BH3496				(PF06445)
272558.BH1929				PF01610
272558.BH0275				(PF05598)
272558.BH2641				PF01610
272558.BH0089				PF01610
272558.BH1686				PF01610
272558.BH2070				(PF05598)
272558.BH1901				(PF05598)
272558.BH3218				(PF06445)
272558.BH0416				PF01610
272558.BH3506				(PF06445)
272558.BH3507				PF01610
272558.BH1347				PF01610
272558.BH2119				(PF06445)
272558.BH0401				(PF06445)
272558.BH2477				PF01610
272558.BH2472				PF01610
272558.BH2056				(PF00398)
272558.BH1963				PF01610
272558.BH3985				(PF05598)
272558.BH0767				PF01610
272558.BH0765				(PF05598)
272558.BH4047				(PF06445)
272558.BH2922				PF01610
272558.BH1946				PF01610
272558.BH1546				PF01610
272558.BH0380				(PF00398)
272558.BH2841				(PF05598)
272558.BH0954				PF01610
272558.BH3409				PF01610
272558.BH0379				PF01610

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================