Metamenu

Effective results for Chlamydophila felis Fe/C-56 (eggnog40)

Summary

Number of putative secreted proteins: 183
- Predicted by EffectiveT3: 64 (high confidence), 72 (low confidence)
- Predicted by EffectiveCCBD: 11 within, 6 before, 14 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 34 proteins (14 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
264202.CF0731+(PF03797) PF02415ER
264202.CF0735(PF03797) PF02415ER
264202.CF0730(PF03797) PF02415(mitochondrial)
264202.CF0209(PF03797) PF02415mitochondrial
264202.CF0737(>)(PF03797)ER
264202.CF0801(PF03797) PF02415ER
264202.CF0802(PF03797) PF02415ER
264202.CF0273(>)(PF08123)(mitochondrial)
264202.CF0725(+)(PF03797) PF02415ER
264202.CF0722(+)(PF03797) PF02415ER
264202.CF0826+(PF05677)(mitochondrial); (plastid)
264202.CF0049(<)ER
264202.CF0514+ER
264202.CF0353+mitochondrial; (mitochondrial)
264202.CF0380(+)PF02415ER
264202.CF0736(PF03797)ER
264202.CF0703(<)ER
264202.CF0965(<)(mitochondrial)
264202.CF0691+ER
264202.CF0849+(ER)
264202.CF0399+(mitochondrial); (plastid)
264202.CF0008(+)(>)mitochondrial; plastid
264202.CF0329+(mitochondrial)
264202.CF0301+ER
264202.CF0300+(PF02902)plastid
264202.CF0888+mitochondrial
264202.CF0614(>)ER
264202.CF0726(PF03797)ER
264202.CF0721(+)(PF03797) PF02415ER
264202.CF0723PF02415ER
264202.CF0729(PF03797)ER
264202.CF0728PF02415ER
264202.CF0989(>)(mitochondrial)
264202.CF0324(+)ER
264202.CF0732(PF03797)(ER)
264202.CF0776(+)(mitochondrial)
264202.CF0671(+)(mitochondrial)
264202.CF0450+(mitochondrial)
264202.CF0175++
264202.CF0294(+)mitochondrial
264202.CF0293+(mitochondrial)
264202.CF0992(+)ER
264202.CF0630(+)(mitochondrial)
264202.CF0315+(mitochondrial)
264202.CF0747+PF10275
264202.CF0441++
264202.CF0592(+)(ER); ER
264202.CF0806+(mitochondrial)
264202.CF0837+(plastid)
264202.CF0718(+)ER
264202.CF0719+PF02415
264202.CF0696+(plastid)
264202.CF0827+(plastid)
264202.CF0688(<)(mitochondrial)
264202.CF0610+plastid
264202.CF0724+(PF03797)
264202.CF0220(+)(mitochondrial)
264202.CF0388+(>)
264202.CF0866(+)(mitochondrial)
264202.CF0609+
264202.CF0425+
264202.CF0785+
264202.CF0761+
264202.CF0322(>)
264202.CF0259+
264202.CF0258+
264202.CF0516+
264202.CF0517+
264202.CF0109+
264202.CF0379(PF03797)
264202.CF0670(>)
264202.CF0452(+)(mitochondrial)
264202.CF0451+
264202.CF0030+
264202.CF0172+
264202.CF0195(<)
264202.CF0298(>)
264202.CF0854+
264202.CF0853+
264202.CF1000(>)
264202.CF0025(PF02201)
264202.CF0734(PF03797)
264202.CF0511(>)
264202.CF0418+
264202.CF0892(>)
264202.CF0646+
264202.CF0556+
264202.CF0611+
264202.CF0345(>)
264202.CF0699+
264202.CF0741(+)(ER)
264202.CF0662+
264202.CF0442+
264202.CF0443(PF01823)
264202.CF0623+
264202.CF0062(PF07720)
264202.CF0060+
264202.CF0843(+)(PF02201)
264202.CF0851+
264202.CF0850+
264202.CF0713+
264202.CF0573(PF03219)
264202.CF0470+
264202.CF0473(+)(>)
264202.CF0084+
264202.CF0400(+)(plastid)
264202.CF0887+
264202.CF0880(PF03219)
264202.CF0882+
264202.CF0277+
264202.CF0276(PF07720)
264202.CF0275+
264202.CF0274+
264202.CF0685+
264202.CF0668(+)(plastid)
264202.CF0618+
264202.CF0439+
264202.CF0720(PF03797)
264202.CF0059+
264202.CF0545(+)(plastid)
264202.CF0579+
264202.CF0931+
264202.CF0818+
264202.CF0942+
264202.CF0363(PF09825)
264202.CF0484+
264202.CF0311+
264202.CF0508+
264202.CF0053(<)
264202.CF0152+
264202.CF0485+
264202.CF0160+
264202.CF0219+
264202.CF0218+
264202.CF0214(+)plastid
264202.CF0217(+)(ER)
264202.CF0600(+)
264202.CF0421(+)
264202.CF0569(+)
264202.CF0132(+)
264202.CF0106(+)
264202.CF0103(+)
264202.CF0778(+)
264202.CF0773(+)
264202.CF0677(+)
264202.CF0513(+)
264202.CF0458(+)
264202.CF0453(+)
264202.CF0073(+)
264202.CF0200(+)
264202.CF0994(+)
264202.CF0639(+)
264202.CF0382(+)
264202.CF0707(+)
264202.CF0706(+)
264202.CF0246(+)
264202.CF0098(+)
264202.CF0445(+)
264202.CF0440(+)
264202.CF0523(+)
264202.CF0831(+)
264202.CF0494(+)
264202.CF0158(+)
264202.CF0493(+)
264202.CF0499(+)
264202.CF0619(+)
264202.CF0752(+)
264202.CF0757(+)
264202.CF0612(+)
264202.CF0665(+)
264202.CF0129(+)
264202.CF0433(+)
264202.CF0941(+)
264202.CF0483(+)
264202.CF0764(+)
264202.CF0029(+)
264202.CF0165(+)
264202.CF0155(+)
264202.CF0210(+)
264202.CF0213(+)
264202.CF0980(+)
264202.CF0862(+)
264202.CF0860(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================