Metamenu

Effective results for Onion yellows phytoplasma OY-M (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 109 proteins (61 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
262768.PAM_130(PF00004) (PF01434)ER; (ER)
262768.PAM_075PF08275ER; (ER)
262768.PAM_071PF09588(mitochondrial); mitochondrial
262768.PAM_477(PF01434)ER
262768.PAM_572PF08275 (PF13155)(ER)
262768.PAM_685PF08275 (PF13155)(ER)
262768.PAM_374PF02223(mitochondrial)
262768.PAM_326(PF00004)ER
262768.PAM_532(PF00004)ER
262768.PAM_403(PF00004)ER
262768.PAM_147(PF11074)mitochondrial
262768.PAM_393(PF00004)ER
262768.PAM_569PF08275 (PF13155)(ER)
262768.PAM_561(PF00004)(ER)
262768.PAM_366(PF00004)ER
262768.PAM_520PF09588(mitochondrial)
262768.PAM_316(PF00004)ER
262768.PAM_514(PF00004)ER
262768.PAM_356(PF00004)ER
262768.PAM_644PF08275 (PF13155)(ER)
262768.PAM_544PF02223(mitochondrial)
262768.PAM_543PF09588(mitochondrial)
262768.PAM_549PF08275 (PF13155)(ER)
262768.PAM_762(PF01434)mitochondrial
262768.PAM_727(PF00004)ER
262768.PAM_653(PF00004)ER
262768.PAM_325(PF00216)(mitochondrial)
262768.PAM_664(PF00004)(mitochondrial)
262768.PAM_365(PF00216)(mitochondrial)
262768.PAM_627PF08275 (PF13155)
262768.PAM_524PF08275 (PF13155)
262768.PAM_713(PF00004) (PF01434)
262768.PAM_387PF08275(ER)
262768.PAM_345PF09588(mitochondrial)
262768.PAM_658(PF00004) (PF01434)
262768.PAM_448(PF00004)
262768.PAM_074PF03796
262768.PAM_072PF02223
262768.PAM_570PF03796
262768.PAM_571PF03796
262768.PAM_578(PF01434)
262768.PAM_758(PF00216)
262768.PAM_759PF00436
262768.PAM_688PF02223
262768.PAM_686PF03796
262768.PAM_373PF09588
262768.PAM_375PF03796
262768.PAM_534(PF00216)
262768.PAM_535PF00436
262768.PAM_324PF00436
262768.PAM_402(PF00216)
262768.PAM_667PF00910
262768.PAM_390PF02223
262768.PAM_391PF09588
262768.PAM_394(PF00216)
262768.PAM_396PF00436
262768.PAM_030(PF13246)
262768.PAM_041PF00436
262768.PAM_044(PF00004)
262768.PAM_564PF00436
262768.PAM_563(PF00216)
262768.PAM_699PF00436
262768.PAM_698(PF00216)
262768.PAM_695(PF00004)
262768.PAM_364PF00436
262768.PAM_186(PF13246)
262768.PAM_622PF09588
262768.PAM_722PF08275not used
262768.PAM_523PF03796
262768.PAM_521PF02223
262768.PAM_317(PF00216)
262768.PAM_319PF00436
262768.PAM_242(PF00216)
262768.PAM_410PF00436
262768.PAM_552PF02223
262768.PAM_550PF03796
262768.PAM_677(PF00004)
262768.PAM_388PF03796
262768.PAM_701PF00436
262768.PAM_512PF00436
262768.PAM_513(PF00216)
262768.PAM_013PF03796
262768.PAM_357(PF00216)
262768.PAM_359PF00436
262768.PAM_648PF09588
262768.PAM_647PF02223
262768.PAM_645PF03796
262768.PAM_064(PF00004)
262768.PAM_062PF00436
262768.PAM_063(PF00216)
262768.PAM_545PF03796
262768.PAM_010PF00436
262768.PAM_307(PF00004)
262768.PAM_301(PF09419)
262768.PAM_117(PF00004)
262768.PAM_043(PF00216)
262768.PAM_334PF03796
262768.PAM_335PF03796
262768.PAM_333PF09588
262768.PAM_726PF00436
262768.PAM_480(PF00004)
262768.PAM_341PF03796
262768.PAM_344PF02223
262768.PAM_155(PF01434)
262768.PAM_655PF00436
262768.PAM_654(PF00216)
262768.PAM_235(PF01434)
262768.PAM_234(PF00004)
262768.PAM_230PF02223

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================